PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_32028 | ||||||||
Common Name | KK1_033977 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 247aa MW: 28494.9 Da PI: 8.7657 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43.5 | 4.1e-14 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i n+ r+ t+ +R++gilKK eELS+ C++e + ii+++ C.cajan_32028 10 FITNDAARKATYKQRKKGILKKIEELSTYCGIESCAIIYGP 50 799************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 13.918 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.0E-13 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.84E-19 | 3 | 94 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.81E-22 | 3 | 85 | No hit | No description |
Pfam | PF00319 | 1.2E-12 | 10 | 50 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MPKTKVKLAF ITNDAARKAT YKQRKKGILK KIEELSTYCG IESCAIIYGP FVEAPEIWPS 60 ESGVQNVLGK FRTMTEWEQN RKMLDQEGFI EQNIVKGREK VKKLAKENKE KEMNMLMHQC 120 LKSGKIDPDN YMMATDFVNL SAVIDKKLKE INRKLETLNV NEMPPHQPKM QATTNHPHPQ 180 TEATSKQHQT QEPTQTVKPE EMTPLNYDQE PDLIPNPMQR QLLMENFIIG NEKETSLPPF 240 RDAKVPL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_32028 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020237628.1 | 0.0 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A151RPT1 | 0.0 | A0A151RPT1_CAJCA; Agamous-like MADS-box protein AGL80 | ||||
STRING | GLYMA18G05916.1 | 7e-76 | (Glycine max) | ||||
STRING | GLYMA18G05976.1 | 5e-76 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF452 | 33 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 6e-39 | AGAMOUS-like 80 |