PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_31761 | ||||||||
Common Name | KK1_034646 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 295aa MW: 33683.3 Da PI: 8.4958 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.9 | 1.8e-05 | 132 | 151 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ C.cajan_31761 132 FACSICSKTFNRYNNMQMHM 151 78*****************9 PP | |||||||
2 | zf-C2H2 | 14 | 0.00015 | 216 | 238 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C+k+F k + ++H +++ C.cajan_31761 216 FMCRKCSKTFAVKGDWRTHEKNC 238 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.7E-6 | 101 | 155 | No hit | No description |
SMART | SM00355 | 0.17 | 132 | 154 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.2E-5 | 132 | 151 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.45 | 132 | 159 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 134 | 154 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 190 | 179 | 211 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 7.35E-6 | 202 | 236 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.9E-5 | 202 | 236 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 53 | 216 | 236 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MSFRECNVEN KNLCLQTPTN FIEWLKPSNS ISPSSPSSLT QHETIQFLPF KEEHGVQKEG 60 FEVKGEKVEQ VTVALHIGLP NTGGHDEDDE KKGFQVKEEE PLKKSFQGCS FNQERRFWIP 120 TPSQILVGPM QFACSICSKT FNRYNNMQMH MWGHGSEFRK GPDSLKGTQP AAMLRLPCYC 180 CAQGCKNNIN HPRAKPLKDF RTLQTHYKRK HGAKPFMCRK CSKTFAVKGD WRTHEKNCGK 240 LWYCTCGSDF KHKRSLKDHI RSFGKGHSPH PSLEGFVEDE KECVTGSDED EVAHA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_31761 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 1e-177 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020238170.1 | 0.0 | zinc finger protein WIP3 | ||||
Swissprot | Q9SGD1 | 1e-113 | ZWIP3_ARATH; Zinc finger protein WIP3 | ||||
TrEMBL | A0A151RN31 | 0.0 | A0A151RN31_CAJCA; Protein TRANSPARENT TESTA 1 | ||||
STRING | XP_007150080.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF170 | 34 | 289 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08290.1 | 1e-113 | WIP domain protein 3 |
Publications ? help Back to Top | |||
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