PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_30026
Common NameKK1_031594
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GRAS
Protein Properties Length: 567aa    MW: 63087.3 Da    PI: 6.5499
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_30026genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS438.25.9e-1342065661374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfsh 95 
                    lv+lLl+cAeav++++   a+++L +l+  ++p gd+mqR+aa+ft  L+arl+   +++ +   + ++ s++ns e+l+++++ ++++P++kf+h
  C.cajan_30026 206 LVHLLLACAEAVAKEEYMVARRYLHHLNRVVTPLGDSMQRVAACFTDSLSARLNAtLTPKPS---KLTPPSPSNSLEVLKIYQIVYQACPYIKFAH 298
                    68*****************************************************3334444...444444456********************** PP

           GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                    +taNqaI ea+e+e+rvH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+      + ++etg+ L+++A++l++pfef++ v ++ledl++
  C.cajan_30026 299 FTANQAIFEAFETEDRVHVIDLDILQGYQWPAFMQALAARPSGAPFLRITGVGP----TLDGVRETGRCLTELAHSLRIPFEFHA-VGEQLEDLKP 389
                    ******************************************************....99*************************.7********* PP

           GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                    ++L+ + gEalaVn v +lhr++       s+  ++L+++++  P+vv++veqea+hn++ Fl rfleal+yysa+fdsl+a++p+es +r+kvE+
  C.cajan_30026 390 NMLNRRVGEALAVNAVNRLHRVP------GSHLGNLLSMIRDQAPNVVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPTESAQRAKVEQ 479
                    **********************9......444557************************************************************* PP

           GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++++ei+n+vacega+r+erhe+lekWr+ +e  GFk v+ls +a++q k ll  ++ +gyr+ e++g+l+lgW+dr++v++SaWr
  C.cajan_30026 480 YIFAPEIRNIVACEGAARFERHERLEKWRKIMEGKGFKGVALSPNAVTQSKILLGLYSCEGYRLTEDKGCLLLGWQDRAIVAASAWR 566
                    **************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.691180546IPR005202Transcription factor GRAS
PfamPF035142.0E-131206566IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
QLFSPVRNVP SPQASSYNCN YNYAQGMQGQ SLLGCSPPRF SSSQIGAFNS SHKGKGLSPL  60
HRVFNSPNNQ YMQHVENLSL PAIEEFLEDY QGYSSSKESS DIASSSECFD LSSQIPPMLD  120
GLTMPNSSRY HDDETSVHGA AAGSRSSQIS QESDMYHQMG SMASASLSQA LQQERYHEKQ  180
QKQQQENLML PIPIGIEQEQ DNGLQLVHLL LACAEAVAKE EYMVARRYLH HLNRVVTPLG  240
DSMQRVAACF TDSLSARLNA TLTPKPSKLT PPSPSNSLEV LKIYQIVYQA CPYIKFAHFT  300
ANQAIFEAFE TEDRVHVIDL DILQGYQWPA FMQALAARPS GAPFLRITGV GPTLDGVRET  360
GRCLTELAHS LRIPFEFHAV GEQLEDLKPN MLNRRVGEAL AVNAVNRLHR VPGSHLGNLL  420
SMIRDQAPNV VTLVEQEASH NGPYFLGRFL EALHYYSAIF DSLDATFPTE SAQRAKVEQY  480
IFAPEIRNIV ACEGAARFER HERLEKWRKI MEGKGFKGVA LSPNAVTQSK ILLGLYSCEG  540
YRLTEDKGCL LLGWQDRAIV AASAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-991985659377Protein SCARECROW
5b3h_D1e-991985659377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_30026
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020235604.10.0DELLA protein RGL1
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A151RWA90.0A0A151RWA9_CAJCA; DELLA protein GAI1 (Fragment)
STRINGXP_007161687.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.15e-99RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]