PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_30022
Common NameKK1_031590
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GRAS
Protein Properties Length: 655aa    MW: 72563.7 Da    PI: 6.0864
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_30022genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS436.42.2e-1332946541374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    lv+lLl+cAeav++++   a+++L +l+  ++p gd+mqR+aa+ft  L+ rl+   + + k  +p++ s++ns e+l+++++ ++++P++kf+h+
  C.cajan_30022 294 LVHLLLACAEAVAKEEYMVARRYLHHLNRVVTPLGDSMQRVAACFTDSLSVRLNT--TLTPKPSKPTPPSPSNSLEVLKIYQIVYQACPYVKFAHF 387
                    68****************************************************9..5555566777777778*********************** PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    taNqaI ea+e+e+rvH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+      + ++etg+ L+++A++l++pfef++ v ++ledl+++
  C.cajan_30022 388 TANQAIFEAFETEDRVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----TLDGVRETGRCLTELAHSLRIPFEFHA-VGEQLEDLKPS 478
                    *****************************************************....99*************************.7********** PP

           GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                    +L+ + gEalaVn v +lhr++       s+  ++L+++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p+es +r+kvE+ 
  C.cajan_30022 479 MLNRRVGEALAVNAVNRLHRVP------GSHLGNLLSMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPAESAQRAKVEQY 568
                    *********************9......444557************************************************************** PP

           GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    ++++ei+n+vacega+r+erhe+lekWr+ +e  GFk ++ls +a++q k ll  ++ +gyr+ e++g+l+lgW+dr++v++SaWr
  C.cajan_30022 569 IFAPEIRNIVACEGAARFERHERLEKWRKIMEGKGFKGMALSPNAVTQSKILLGLYSCEGYRLTEDKGCLLLGWQDRAIVAASAWR 654
                    *************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.357268634IPR005202Transcription factor GRAS
PfamPF035147.5E-131294654IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MINSLCGSSV SLKSEHNNSR TKTSSNDSVL QSKKNNATQS SSDLDTSLTP LSLNLPALKF  60
DLDGDVEVQS PDSSMWESFF ADQLDADFMI SSPVRNVPSP QASSYNCNYN YTQGMQGQSL  120
SGCSPPRFSS SQIGAFNSSH KGKGLSPLHR VFNSPNNQYM QHVENLSLPA IEEFLEDYQG  180
YSSNKVSSDI ASSSECFDLS SQIPSMLDGL TMPNSSRYHE DETLVHGGVA GSRSSQISQE  240
SDMYHQMGSM ASASLSQALQ QERYHEKQQK QQQENLMLPI PIGIEQEQDS GLQLVHLLLA  300
CAEAVAKEEY MVARRYLHHL NRVVTPLGDS MQRVAACFTD SLSVRLNTTL TPKPSKPTPP  360
SPSNSLEVLK IYQIVYQACP YVKFAHFTAN QAIFEAFETE DRVHVIDLDI LQGYQWPAFM  420
QALAARPGGA PFLRITGVGP TLDGVRETGR CLTELAHSLR IPFEFHAVGE QLEDLKPSML  480
NRRVGEALAV NAVNRLHRVP GSHLGNLLSM IRDQAPNIVT LVEQEASHNG PYFLGRFLEA  540
LHYYSAIFDS LDATFPAESA QRAKVEQYIF APEIRNIVAC EGAARFERHE RLEKWRKIME  600
GKGFKGMALS PNAVTQSKIL LGLYSCEGYR LTEDKGCLLL GWQDRAIVAA SAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-9930165325377Protein SCARECROW
5b3h_D8e-9930165325377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_30022
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020235607.10.0DELLA protein RGL1
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A151RWD10.0A0A151RWD1_CAJCA; DELLA protein GAI1
STRINGXP_007161687.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-97RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]