PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_28176
Common NameKK1_030787
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family WRKY
Protein Properties Length: 274aa    MW: 30528.9 Da    PI: 7.9866
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_28176genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY109.51.6e-34131188259
                    --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    +Dgy+WrKYGqK vk+s+fprsYYrCtsa+C+vkk+vers +dp++v++tYeg+H+h+
  C.cajan_28176 131 EDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERSFTDPSIVVTTYEGQHTHP 188
                    8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381305.1E-1102274IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.803.2E-35115190IPR003657WRKY domain
SuperFamilySSF1182901.44E-29122190IPR003657WRKY domain
PROSITE profilePS5081132.133125190IPR003657WRKY domain
SMARTSM007741.1E-40130189IPR003657WRKY domain
PfamPF031065.4E-27131188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
METKDYAMGA CNYPFFDFSS EDKSSLGFME LLGVQDYSPL LDLPSSSDML VPPQTKKDSS  60
EVTNQQPATP NSSSISSASS EAVHDEQNKT VDQAHQHQKT KEQLKAKKTN QKRQREPRFA  120
FMTKSEVDHL EDGYRWRKYG QKAVKNSPFP RSYYRCTSAS CNVKKRVERS FTDPSIVVTT  180
YEGQHTHPSP VMGRSGVSNF GSVMSGSGNY MSQYYQQQVN ISALSSLGFL SSSSSKNSTL  240
TQERPLCYSP GATALLSDHG LLQDVVPSHM LKEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-29120190777Probable WRKY transcription factor 4
2lex_A6e-29120190777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_28176
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312301e-159KT031230.1 Glycine max clone HN_CCL_159 WRKY transcription factor (Glyma03g37940.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020234847.10.0WRKY transcription factor 23
SwissprotO229001e-70WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A151RYG70.0A0A151RYG7_CAJCA; Putative WRKY transcription factor 23
STRINGXP_007163195.11e-133(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.13e-65WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]