PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_28166
Common NameKK1_030777
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GRAS
Protein Properties Length: 421aa    MW: 48667.3 Da    PI: 6.6381
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_28166genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS272.11.8e-83514192374
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkfshl 96 
                     + Ll +Ae v  +++e+a++lL + + +as +++p+qR++++f++AL++r+ ++  ++    + ++++++  ++  +++  + ++  P+ ++ +l
  C.cajan_28166  51 AQFLLGAAERVGCQQFERANRLLLHCQWNASASATPVQRVIFHFARALRERIDKEIGRITVNGSEKNEERELlQKMDTNVALTCHQKIPFNQVMQL 146
                    57899*************************************************7666664444444443334556666666799*********** PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                    t  qaI+e v++e+++H +D++i+ G++ +aL+qaL++R+      l+iT++g +e   k+++eet +rLa+fAe+l++pf+++++ ++++e+++ 
  C.cajan_28166 147 TGIQAIVEHVARETKIHLLDLEIKRGVHCIALMQALTERQdCTVKLLKITAIGLNE--CKTKIEETCKRLASFAESLNLPFSYKTVFVNDMEEIRD 240
                    ****************************************4455699*******55..************************************** PP

           GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                    ++++++++Ea+aV + + l  +++++ ++e+    +++++++++P +++v e ea+hns+sF++rf+eal +ysa+fd+le+ + +e e r+++E+
  C.cajan_28166 241 DHFEIEEDEAVAVYSPYFLRCMVARPYCMEN----LMRVIRNIKPVIMIVLEVEANHNSPSFVTRFIEALFFYSAFFDCLETCIKHEIESRMTIEE 332
                    *******************************....************************************************************* PP

           GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    + l++ i+n+va+eg+er+ r+ + + Wr+ + +  + +  +se+ + qa+l+ ++++ ++  +++++ ++l+ gWk+ p+ s+SaWr
  C.cajan_28166 333 V-LSEGIRNIVAMEGRERTVRNVKINVWRRFFARYRMVETGFSESSMYQAELVAKEFAfGKFCTIDKNGKCLIVGWKGTPMHSISAWR 419
                    9.********************************************************888789***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.67124398IPR005202Transcription factor GRAS
PfamPF035146.1E-8151419IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MMSTEEIIRV AGARYVQYSA HWNDSFCIPM HPYGLDLGGL SEEENRDVEL AQFLLGAAER  60
VGCQQFERAN RLLLHCQWNA SASATPVQRV IFHFARALRE RIDKEIGRIT VNGSEKNEER  120
ELLQKMDTNV ALTCHQKIPF NQVMQLTGIQ AIVEHVARET KIHLLDLEIK RGVHCIALMQ  180
ALTERQDCTV KLLKITAIGL NECKTKIEET CKRLASFAES LNLPFSYKTV FVNDMEEIRD  240
DHFEIEEDEA VAVYSPYFLR CMVARPYCME NLMRVIRNIK PVIMIVLEVE ANHNSPSFVT  300
RFIEALFFYS AFFDCLETCI KHEIESRMTI EEVLSEGIRN IVAMEGRERT VRNVKINVWR  360
RFFARYRMVE TGFSESSMYQ AELVAKEFAF GKFCTIDKNG KCLIVGWKGT PMHSISAWRF  420
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-335841827378Protein SCARECROW
5b3h_A5e-335841826377Protein SCARECROW
5b3h_D5e-335841826377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_28166
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020234822.10.0DELLA protein RGL1
TrEMBLA0A151RYG00.0A0A151RYG0_CAJCA; DELLA protein RGL1
STRINGGLYMA19G40440.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.17e-51RGA-like 1