PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_27801
Common NameKK1_029028
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HD-ZIP
Protein Properties Length: 278aa    MW: 31649 Da    PI: 4.3988
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_27801genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.65.1e-1957110356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    k+++++ +q+++Le+ Fe ++++  +++ +LA++lgL+ rqV vWFqNrRa++k
  C.cajan_27801  57 KKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWK 110
                    566899***********************************************9 PP
2HD-ZIP_I/II128.42.9e-4156148193
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                    ekkrrls +qvk+LE++Fe e+kLep+rKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++y++lk + ++L++++e+L +e+ke
  C.cajan_27801  56 EKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKAKYETLKLSFDTLQQDNEALLKEIKE 148
                    69**************************************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.42E-1939114IPR009057Homeodomain-like
PROSITE profilePS5007117.32952112IPR001356Homeobox domain
SMARTSM003898.6E-1855116IPR001356Homeobox domain
CDDcd000861.70E-1657113No hitNo description
PfamPF000463.8E-1657110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.8E-2059119IPR009057Homeodomain-like
PRINTSPR000317.2E-68392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000317.2E-692108IPR000047Helix-turn-helix motif
PfamPF021831.8E-16112151IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MKRLASSDSL GALITICPPT DEHSPRNNHV YGREFQSMLE GLDEEGCVEE PGHHAEKKRR  60
LSVDQVKALE KNFEVENKLE PDRKVKLAQE LGLQPRQVAV WFQNRRARWK TKQLERDYGV  120
LKAKYETLKL SFDTLQQDNE ALLKEIKELK SRGEGENTES DGSVKEEMVT VAFCETPIPG  180
SETKELSNEC LNKSEGSVLK DGSSESDSSA ILNDENNNSS CGVLQSESLM NCFQFQKQYV  240
KMEDEDEEQN FLSADEACNF FADEQAPTLQ WYCSEEWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_27801
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311651e-175KT031165.1 Glycine max clone HN_CCL_178 homeodomain/HOMEOBOX transcription factor (Glyma08g14130.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020233302.10.0homeobox-leucine zipper protein ATHB-6
SwissprotQ940J15e-83ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLA0A151S3F60.0A0A151S3F6_CAJCA; Homeobox-leucine zipper protein ATHB-16
STRINGXP_007159709.11e-150(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.12e-85homeobox protein 16
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]