PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_26259
Common NameKK1_027792
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family AP2
Protein Properties Length: 291aa    MW: 33349.1 Da    PI: 8.8481
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_26259genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.11.9e-122581155
            AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                   s y+GV++++++gr++A+++d  ++n+ ++k+ + g ++ ++ Aa+a++ a++k++g
  C.cajan_26259 25 SIYRGVTRHRWTGRYEAHLWDkTCWNQsQTKKGRQGAYDEEDAAARAYDLAALKYWG 81
                   57*******************99999988888888*****99*************98 PP
2AP256.85.5e-18124175155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV +++ +grW+A+I   +   g +k+ +lg++gt+eeAa a++ a+ +++g
  C.cajan_26259 124 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTEEEAAMAYDMAAIEYRG 175
                    89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-152591IPR016177DNA-binding domain
PfamPF008476.9E-92581IPR001471AP2/ERF domain
SMARTSM003802.8E-212695IPR001471AP2/ERF domain
PROSITE profilePS5103218.4922689IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-122691IPR001471AP2/ERF domain
PRINTSPR003672.9E-62738IPR001471AP2/ERF domain
CDDcd000182.66E-24124185No hitNo description
SuperFamilySSF541712.48E-18124185IPR016177DNA-binding domain
PfamPF008479.1E-14124175IPR001471AP2/ERF domain
SMARTSM003801.7E-25125189IPR001471AP2/ERF domain
PROSITE profilePS5103218.465125183IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-17125184IPR001471AP2/ERF domain
PRINTSPR003672.9E-6165185IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MAKTKTKGKV KVKRPRNTIP SQRTSIYRGV TRHRWTGRYE AHLWDKTCWN QSQTKKGRQG  60
AYDEEDAAAR AYDLAALKYW GQDTLLNFPL SNYEDELKDM EDQSKEEYIG SLRRKSSGFS  120
RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY LYLGTYGTEE EAAMAYDMAA IEYRGLNAVT  180
NFDLSRYTNW LRPKAQDEAQ SEAHNVSPST SEITRPSSGP IFESLKLKEM VQDCPPPSKS  240
KSNPPPRSFP EDIQTFFETQ DSGIYADTDH DIIFGDLTSI HSPIFHFELN A
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_26259
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020232287.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-105AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A151S6P00.0A0A151S6P0_CAJCA; AP2-like ethylene-responsive transcription factor At1g16060 family
STRINGcassava4.1_025233m1e-136(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.22e-90AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]