PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_26191
Common NameKK1_027044
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C3H
Protein Properties Length: 343aa    MW: 38306.9 Da    PI: 7.5734
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_26191genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.13.4e-0984108126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +kt++C  f+  G C+ G++C+FaHg
  C.cajan_26191  84 FKTRICAKFRL-GACRNGENCNFAHG 108
                    69*********.*************9 PP
2zf-CCCH27.55.4e-09146169225
                    -S---SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                    k++lC+ ++ + +C+yGd+C+F H
  C.cajan_26191 146 KMKLCKKYYNGEECPYGDKCSFLH 169
                    789*******66************ PP
3zf-CCCH421.5e-13230256127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +kt+lC  f  tG+C++Gd C+FaHg+
  C.cajan_26191 230 WKTKLCIKFETTGHCPFGDDCHFAHGQ 256
                    8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.4E-1380116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-881114IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-583109IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.60583110IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-784108IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-7144171IPR000571Zinc finger, CCCH-type
SMARTSM003560.0016144171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.901144172IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-6146169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-9146170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-16225260IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-10227260IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.375229257IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6229256IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-11230256IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MSFSDHIPSF MMSPPSFSTD TDAIEVRLQF PMNHEAMEPH SPQDQPPSFK RARTCDNSHS  60
NAMPYPPRMV QHPTVNKGTS HIFFKTRICA KFRLGACRNG ENCNFAHGVE DMRQPPPNWQ  120
DLVGLRNEER QQPPPNWDDD EKIIHKMKLC KKYYNGEECP YGDKCSFLHE DPAKFRDDSG  180
RFRESIAISI GTNGSPKSYG DASSVLESNR AVNIGLNSNV SRGNVKSTYW KTKLCIKFET  240
TGHCPFGDDC HFAHGQAELH VPGGGRSDAE TAGASTISTK PIIPTIPRAT SVSSNDAPSS  300
HRASVPPENE EEQGKKHLLK WKGPKKINRI YGDWLDDLPL VAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_26191
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020231607.10.0zinc finger CCCH domain-containing protein 39
SwissprotQ9LT811e-95C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A151S8N50.0A0A151S8N5_CAJCA; Zinc finger CCCH domain-containing protein 39
STRINGGLYMA17G12560.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83333345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-87C3H family protein