PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_25307 | ||||||||
Common Name | KK1_025357 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | WOX | ||||||||
Protein Properties | Length: 219aa MW: 23723.2 Da PI: 8.8706 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24 | 6.4e-08 | 13 | 40 | 34 | 57 |
HHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 34 Akkl....gLterqVkvWFqNrRakekk 57 k l + +++V++WFqNrR + ++ C.cajan_25307 13 RKLLekfgTVGDANVFYWFQNRRSRSRR 40 444444467889*************997 PP | |||||||
2 | Wus_type_Homeobox | 62.4 | 9.3e-21 | 1 | 42 | 24 | 65 |
Wus_type_Homeobox 24 lrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++P+k+e+ ri++ Le++G ++d+NVfyWFQNr++R+r++q C.cajan_25307 1 MVNPPKDETVRIRKLLEKFGTVGDANVFYWFQNRRSRSRRRQ 42 78**************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 8.697 | 1 | 41 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.26E-7 | 3 | 47 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.7E-5 | 9 | 40 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-4 | 17 | 45 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MVNPPKDETV RIRKLLEKFG TVGDANVFYW FQNRRSRSRR RQRQIQASLN QVGGASSNNN 60 NNNLYQHHHQ NNTPLVANMG FGGGANSSLP NSSYISGSSS SSFGGSSQES LSEFFSPSTQ 120 MGFPGIDHHA SSVSSSVLYP PEASNLNYHS GFGGIPSGFI TVFINGVATE VPRGPIDIKA 180 TFGEDVMLVH SSGVSVPTNE FGFLMQGLQH GESYFLVRT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_25307 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 7e-68 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020229993.1 | 1e-156 | WUSCHEL-related homeobox 11 | ||||
Swissprot | Q6X7J3 | 3e-50 | WOX11_ARATH; WUSCHEL-related homeobox 11 | ||||
TrEMBL | A0A151SDB5 | 1e-157 | A0A151SDB5_CAJCA; WUSCHEL-related homeobox 11 | ||||
STRING | XP_007151517.1 | 1e-101 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5898 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03660.1 | 2e-45 | WUSCHEL related homeobox 11 |
Publications ? help Back to Top | |||
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