PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_24896
Common NameKK1_024994
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C2H2
Protein Properties Length: 213aa    MW: 23578.9 Da    PI: 6.2165
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_24896genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.9e-053456123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C+ C + F++   L  H+++H
  C.cajan_24896 34 YTCTFCRREFRSAQALGGHMNVH 56
                   9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.09E-63161No hitNo description
Gene3DG3DSA:3.30.160.608.3E-43259IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.5E-53457IPR007087Zinc finger, C2H2
SMARTSM003550.00663456IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1573461IPR007087Zinc finger, C2H2
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MWNPRDLEDD SWEVRAFAED TNNVMGTTWP PRSYTCTFCR REFRSAQALG GHMNVHRRDR  60
ARLHQASPNN TISPLSLAHP SSSFLNINIP HSHQEHLVAN GGFCLLYPFP SPNTAAPFPT  120
LNHHTALNNN ACGDSPSTLF SVSPHSNHTP NNFMPSSFDF SMPQPASEMP DFSSYSLGSA  180
KVELEPATSS VNNGSHDEEL DLELRLGNRS TST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-132956229superman protein
2l1o_A3e-132956229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_24896
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150344e-75AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020229627.11e-156transcriptional regulator SUPERMAN
TrEMBLA0A151SEQ11e-155A0A151SEQ1_CAJCA; Putative transcriptional regulator RABBIT EARS
STRINGGLYMA05G23620.15e-77(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.12e-37C2H2 family protein