PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | C.cajan_24870 | ||||||||
Common Name | KK1_024968 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 210aa MW: 23545.7 Da PI: 8.4056 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.5 | 6.3e-20 | 64 | 118 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+++++++ ++++ LAk+l+Lt rqV vWFqNrRa+ k C.cajan_24870 64 RKKLRLTKEQSAMLEESFKQHSTLNPKQKQALAKQLSLTPRQVEVWFQNRRARTK 118 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 126.2 | 1.5e-40 | 64 | 153 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq+++LEesF+++++L+p++K++la++L l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l C.cajan_24870 64 RKKLRLTKEQSAMLEESFKQHSTLNPKQKQALAKQLSLTPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 153 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.96E-19 | 53 | 121 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.767 | 60 | 120 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.6E-17 | 62 | 124 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.8E-17 | 64 | 118 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.52E-17 | 64 | 121 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.7E-19 | 64 | 118 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 95 | 118 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 2.8E-25 | 120 | 163 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 3.5E-10 | 120 | 154 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 210 aa Download sequence Send to blast |
MGHNNKVSCE DPLEQTSPHS AVSSFSSGRV KRERDLSCEE VDVTETERVS SRASDEEEDG 60 TTARKKLRLT KEQSAMLEES FKQHSTLNPK QKQALAKQLS LTPRQVEVWF QNRRARTKLK 120 QTEVDCEFLK KCCETLTDEN RRLQKELQEL KALKLAQPLY MPMPAATLTM CPSCERLGGG 180 VNGGASPKTP FSMAPKPHFF NPFANPSAAC |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 112 | 120 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | C.cajan_24870 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KT031173 | 1e-175 | KT031173.1 Glycine max clone HN_CCL_18 homeodomain/HOMEOBOX transcription factor (Glyma17g16930.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020229605.1 | 1e-154 | homeobox-leucine zipper protein HAT22 | ||||
Swissprot | P46604 | 1e-85 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A151SEB9 | 1e-153 | A0A151SEB9_CAJCA; Homeobox-leucine zipper protein HAT22 | ||||
STRING | XP_007155789.1 | 1e-134 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1144 | 33 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37790.1 | 2e-76 | HD-ZIP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|