PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_24731 | ||||||||
Common Name | KK1_026203 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | ERF | ||||||||
Protein Properties | Length: 163aa MW: 17960.5 Da PI: 10.2222 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 68.7 | 1.1e-21 | 11 | 61 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrd ++ ++r++lg+f+t+eeAa a++aa+++l+g+ C.cajan_24731 11 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDAAARSLRGA 61 69*******.**********883....5*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.51E-20 | 11 | 67 | No hit | No description |
SMART | SM00380 | 5.6E-36 | 11 | 74 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-32 | 11 | 68 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-14 | 11 | 60 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.02E-23 | 11 | 68 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.051 | 11 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-11 | 12 | 23 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-11 | 34 | 50 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MASSSSSRDG HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDAAARSLRG 60 AKAKTNFPPP PPLCLDLNAP SSDHHRWPPL PSRALVLTEF LHTAVLKDID PPLPPPSAVP 120 HRRGEASAAV QVVESSHSQT ASFLGLVRRG IPIDLNEPPP LWL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-22 | 11 | 68 | 5 | 63 | ATERF1 |
3gcc_A | 9e-22 | 11 | 68 | 5 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00645 | PBM | Transfer from LOC_Os05g41760 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_24731 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 7e-95 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020230930.1 | 1e-114 | ethylene-responsive transcription factor 12 | ||||
Swissprot | Q94ID6 | 1e-44 | ERF81_ARATH; Ethylene-responsive transcription factor 12 | ||||
TrEMBL | A0A151SAN7 | 1e-113 | A0A151SAN7_CAJCA; Ethylene-responsive transcription factor 12 | ||||
STRING | GLYMA13G31010.1 | 6e-86 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 4e-40 | ERF domain protein 12 |