PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_24192

Common Name

Dof3, KK1_024867

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

Dof

Protein Properties

Length: 307aa MW: 33772.7 Da PI: 8.4766

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_24192	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	114.3	5.2e-36	43	102	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++lkcprCdstntkfCyynny+ sqPr+fC+aC+r+WtkGG+lrnvPvGggr++++ + C.cajan_24192 43 PSESLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVK 102 67899***********************************************97766544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-20	43	91	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-31	46	99	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.465	47	101	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	49	85	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MGLSSKQVSS SGLDWKQTLL EAQNLELPKP NLMRKQQQQQ TQPSESLKCP RCDSTNTKFC 60 YYNNYNKSQP RHFCRACKRH WTKGGTLRNV PVGGGRKNKR VKKSSTPTTP STTTTTTTST 120 CTATGTTNMD AMLGSHMTIQ TSLPDDHQKN MAPSLYHALI RPPPLLLHQN LMNTRDLEGK 180 DHFGIGIGIG IGNIFPSSTL PLPHQSQSPL FPFSTSSSSF DTNPCSVSTS LRSSNVYNYG 240 EEFKAMEEPT INSTIVPSTG GTNTQPWEIA ATSGAGLGSS SYWNWEDFDS LVSTDLKDPW 300 DDSDIKP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_24192

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020229524.1	0.0	dof zinc finger protein DOF3.4
TrEMBL	A0A0K8K5T4	0.0	A0A0K8K5T4_CAJCA; Dof protein
STRING	XP_007159297.1	1e-172	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5107	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	7e-25	DOF zinc finger protein 1

Publications ? help Back to Top
Malviya N, et al. Genome wide in silico characterization of Dof gene families of pigeonpea (Cajanus cajan (L) Millsp.). Mol. Biol. Rep., 2015. 42(2): p. 535-52 [PMID:25344821]