PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_23510
Common NameKK1_024197
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C3H
Protein Properties Length: 781aa    MW: 87817.3 Da    PI: 8.7992
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_23510genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.88.9e-09173196226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    +t +Cr+fa+ G C++G++C+F H 
  C.cajan_23510 173 RTQPCRDFAA-GKCRRGSQCHFLHH 196
                    689*******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.57E-5169198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.92171198IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5171197IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-7171197IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-6173196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.399230257IPR000571Zinc finger, CCCH-type
SMARTSM003560.09231256IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-4292318IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.371292319IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-5295317IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 781 aa     Download sequence    Send to blast
MSGSGRKTSS KWDSRDEPEF ASYSVASRDS SKWSNLERND KLNPRMGFSG KEPFSGGRGP  60
SKDDITNKDY RVLDPTNARD TDGSYSMEMS PGPEDCKNKY SQSPKNGWSR SVRINFRNRP  120
YKSIIGGRIK GGISWLEVCH KCHKLSNQSR SRSRSPPRSF RRDLGVNDRY RMRTQPCRDF  180
AAGKCRRGSQ CHFLHHDNQN YDGWESRHRH DGTPRYSAPH ESGDYSRTSG RSNDTCINYA  240
KGRCRMGASC KYVHHDNSDQ FSSVDESTRE REIDRRRPES SFEHVGRYST NQNGDIPCKF  300
FAFGNCRNGK HCRFSHDWQA CGSPNRRFGD DRWGLDGSTA DENKVWGGSK QNDLVVVSNI  360
AKLVEDNRNF MGTPEPGFPA WPISDGWDHS LDKNRVHDES PFSSDMKEAN WTAKNDSSNV  420
HTSQSVGSDI WPGNEKMSPD WNYGVGSSTH IKEEHGQSKQ QVLPGQVFHQ NVNALHSSSC  480
LAIGQSQGAA SIVPPIVRTV DDIPNQEVSA EKKYIVEPTI QDVNVSQVSS RNPLTQNMVS  540
KEQLAQLTNL SASLAHILGA GQQLPQLYAT SISLDSKDTP FLSKTEGKNI PKDTAEIPSL  600
LSKLGQHFDE SNSKPAFSEE QFVKSEHSVQ LQKGENVEVN KENKVVAEEK QSSSCENKIT  660
EENGPMKNLD QNSGPDEAKK TKDVKGIRAF KFSLVEFVKE LLKPTWKDGK IAKEDYKAIV  720
KKVTDKVTGT VQRGHIPQTQ EKIDRYLSLS KPKVNKLIQV SGGSLTDFHQ MYELFQILYP  780
I
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_23510
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020215587.10.0zinc finger CCCH domain-containing protein 38 isoform X1
RefseqXP_020215589.10.0zinc finger CCCH domain-containing protein 38 isoform X1
RefseqXP_029127331.10.0zinc finger CCCH domain-containing protein 38 isoform X1
TrEMBLA0A151TLA70.0A0A151TLA7_CAJCA; Zinc finger CCCH domain-containing protein 38
STRINGXP_004503947.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-09C3H family protein