PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_22472
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ERF
Protein Properties Length: 283aa    MW: 31079 Da    PI: 8.2436
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_22472genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-19115165256
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     +kGVr+++ +g+WvAeIr p++   r+r++lg+f+tae+Aa a++ a+  l+ge
  C.cajan_22472 115 VFKGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEDAAIAYDTAAYILRGE 165
                    69******9.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.1E-33115178IPR001471AP2/ERF domain
PfamPF008474.7E-12115165IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-22115173IPR016177DNA-binding domain
PROSITE profilePS5103222.089115172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-31115173IPR001471AP2/ERF domain
PRINTSPR003673.3E-10116127IPR001471AP2/ERF domain
CDDcd000184.61E-31116174No hitNo description
PRINTSPR003673.3E-10138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MKNSSIPLNL LETLPPLTIG PCFDEPVVSL VSSSSATPTN FPNLTLFLQE PSMMYSSSSS  60
IKGGEVMSAT SDSTYHVSQF GQNQHQACSD AHKMNKNWLS STRTQPMKYG GRGKVFKGVR  120
QRHWGKWVAE IRLPRNRTRV WLGTFDTAED AAIAYDTAAY ILRGEYAQLN FPDLKHVIQA  180
NSLNGTTAAL VEAKLQAISQ GVSSHKKSNV SLAGSRIKHT DENGILTSIS GKDSNSTIRV  240
GAEISERSKS TLHEMSDLET VQLSRMPSLD MDDIWNELSV SNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-21111172163ATERF1
3gcc_A1e-21111172163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_22472
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310950.0KT031095.1 Glycine max clone HN_CCL_19 AP2-EREBP transcription factor (Glyma20g33890.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020222424.10.0ethylene-responsive transcription factor ERF062-like
TrEMBLI1LCI21e-159I1LCI2_SOYBN; Uncharacterized protein
STRINGGLYMA10G33700.11e-159(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.12e-46ERF family protein