PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_21739

Common Name

KK1_022382

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

C2H2

Protein Properties

Length: 326aa MW: 37517.4 Da PI: 8.39

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_21739	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2e-05	161	180	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ C.cajan_21739 161 FACSICSKTFNRYNNMQMHM 180 78*****************9 PP
2	zf-C2H2	16.1	3.1e-05	245	267	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +++ C.cajan_21739 245 FMCRKCGKTFAVKGDWRTHEKNC 267 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.81E-5	147	184	No hit	No description
SMART	SM00355	0.17	161	183	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.741	161	188	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.3E-5	161	180	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	2.3E-4	161	180	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	163	183	IPR007087	Zinc finger, C2H2
SMART	SM00355	190	208	240	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	2.39E-6	231	265	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.5E-6	241	265	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	35	245	265	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.704	245	265	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MGLMECNVEN NNKNLYLHAP TFIEWLKPCS SPPSYLNSNT TILSSSSSPS YSSSYSTTHN 60 NEFAREKTIQ FLPILSDKAS RDDEMEVKKE EKVEQVTVAL HIGLPETKGH RDDDDEKKMI 120 FHVKEEEESS KRSLFHGCSF NQERRFWIPT PAQILVGPMQ FACSICSKTF NRYNNMQMHM 180 WGHGSEYRKG PDSLKGTQPA AMLRLPCYCC AQGCKNNINH PRAKPLKDFR TLQTHYKRKH 240 GTKPFMCRKC GKTFAVKGDW RTHEKNCGKL WYCTCGSDFK HKRSLKDHIR SFGKGHNPHP 300 PFEAFEDEKE CITGSDEDEV NNAHHT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_21739

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT095932	0.0	BT095932.1 Soybean clone JCVI-FLGm-20I11 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020215079.1	0.0	zinc finger protein WIP3
Swissprot	Q9SGD1	1e-120	ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBL	A0A151TNY6	0.0	A0A151TNY6_CAJCA; Protein TRANSPARENT TESTA 1
STRING	GLYMA12G09400.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-117	WIP domain protein 3

Publications ? help Back to Top
Zhou X,Meier I Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins. Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5 [PMID:25074908]