PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_21530
Common NameKK1_022165
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HD-ZIP
Protein Properties Length: 837aa    MW: 91801.7 Da    PI: 6.4646
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_21530genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-182583357
                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  C.cajan_21530 25 KYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 83
                   56789****************************************************97 PP
2START160.21.5e-501643712204
                    HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEE CS
          START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmv 95 
                    +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  +++   +e+l+d++ W +++++ e+      g  g+++l +
  C.cajan_21530 164 IAEETLTEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGTIELVY 258
                    789*******************************************************.7777777777***********999999999******* PP

                    EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS
          START  96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187
                    ++++a+++l+p Rdf+++Ry+ +l+ g++v++++S++   + p+    +++vRae+lpSg+li+p+++g+s +++v+h +l++++++++lr+l++s
  C.cajan_21530 259 TQTYAPTTLAPaRDFWTLRYTTSLENGSLVVCERSLSGSGSGPNpaaAAQFVRAETLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYES 354
                    *************************************98888888899************************************************ PP

                    HHHHHHHHHHHHTXXXX CS
          START 188 glaegaktwvatlqrqc 204
                    + + ++k++ a+l++ +
  C.cajan_21530 355 SKVIAQKMTIAALRYIR 371
                    ************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.242084IPR001356Homeobox domain
SMARTSM003892.1E-152288IPR001356Homeobox domain
SuperFamilySSF466892.1E-162487IPR009057Homeodomain-like
CDDcd000864.75E-162585No hitNo description
PfamPF000467.5E-162683IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-182780IPR009057Homeodomain-like
CDDcd146861.77E-677116No hitNo description
Gene3DG3DSA:1.20.5.1709.4E-481130No hitNo description
PROSITE profilePS5084827.103154382IPR002913START domain
CDDcd088751.23E-70158374No hitNo description
Gene3DG3DSA:3.30.530.201.6E-19163367IPR023393START-like domain
SuperFamilySSF559616.59E-34163375No hitNo description
SMARTSM002346.8E-41163373IPR002913START domain
PfamPF018523.7E-48164371IPR002913START domain
PfamPF086705.4E-45697836IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MAMAVAQHRE SSSSGSIDKH LDSGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECP  60
ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSQLVC  120
ENGYMRQQLH TTPAATTDAS CDSVVTTPQQ TMRDANNPAG LLSIAEETLT EFLSKATGTA  180
VDWVQMPGMK PGPDSVGIFA ISQSCSGVAA RACGLVSLEP TKIAEILKDR PSWFRDCRSL  240
EVFTMFPAGN GGTIELVYTQ TYAPTTLAPA RDFWTLRYTT SLENGSLVVC ERSLSGSGSG  300
PNPAAAAQFV RAETLPSGYL IRPCEGGGSI IHIVDHLNLE AWSVPEVLRP LYESSKVIAQ  360
KMTIAALRYI RQIAQETSGE VVYGLGRQPA VLRTFSQRLS RGFNDAVNGF NDDGWTVLNC  420
DGAEDVIIAV NSTKNLSGTS NPASSLTFLG GILCAKASML LQNVPPAVLV RFLREHRSEW  480
ADFNVDAYAA ASLKAGTYAY PGMRPTRFTG SQIIMPLGHT IEHEEMLEVI RLEGHSLAQE  540
DAFVSRDIHL LQICSGIDEH AVGACSELIF APIDEMFPDD APLVPSGFRI IPLDSKPGDK  600
KDTVATNRTL DLTSGFEVSP ATTQGADASS HNTRSVLTIA FQFPFDSSLQ DNVAVMARQY  660
VRSVISSVQR VAMAISPSGI NPAVGAKLSP GSPEAVTLAH WICQSYRHAY LSRYSLVGDM  720
MLKHLWHHQD AILCCSLKSL PVFIFANQAG LDMLETTLVA LQDITLDKIF DESGRKALCS  780
DFAKLMEQGF AYLPAGICMS TMGRHVSYDQ AIAWKVLTGE DNNVHCLAFS FINWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_21530
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020214107.10.0homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A151TN970.0A0A151TN97_CAJCA; Homeobox-leucine zipper protein REVOLUTA
STRINGXP_007132262.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66333147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]