PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_21459

Common Name

Dof6

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

Dof

Protein Properties

Length: 292aa MW: 32121.8 Da PI: 7.8456

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_21459	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	129.1	1.3e-40	26	87	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss C.cajan_21459 26 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 87 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-32	14	84	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.4E-34	28	84	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.646	30	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	32	68	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005730	Cellular Component	nucleolus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
QMSNQSLENM LACSKAQQDR KPRPQPEQAL KCPRCDSTNT KFCYYNNYSL SQPRYFCKSC 60 RRYWTKGGTL RNVPVGGGCR KNKRSSSTSS STSKRVQDQA FTPNHNPLTG LPSLSYDSND 120 LTLALARLQK QSCGQLSYDE HDLSILGNPT STPCDILGNH GMNPSSTNPG FLDALRSGFL 180 GTQSNMHNMY YGYGNGDMGE VDNGNACGGV GVSGDMMMPY DQEMSIATTQ AVSVTTMKQE 240 LCNGREQSEN RVLWGFPWQL NGDTNMGEID SGRASWNGLT PSWHGLINSP LM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_21459

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020214603.1	0.0	dof zinc finger protein DOF2.1
TrEMBL	A0A0K8K635	0.0	A0A0K8K635_CAJCA; Dof protein
TrEMBL	A0A151TN62	0.0	A0A151TN62_CAJCA; Dof zinc finger protein DOF2.1 (Fragment)
STRING	XP_007132171.1	1e-173	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5026	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28510.1	6e-52	Dof family protein

Publications ? help Back to Top
Malviya N, et al. Genome wide in silico characterization of Dof gene families of pigeonpea (Cajanus cajan (L) Millsp.). Mol. Biol. Rep., 2015. 42(2): p. 535-52 [PMID:25344821]