PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_21449
Common NameKK1_022083
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family AP2
Protein Properties Length: 483aa    MW: 53007.6 Da    PI: 7.4947
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_21449genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.1e-17147196155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  C.cajan_21449 147 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 196
                    78*******************......55************************997 PP
2AP241.24.2e-13239289155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  C.cajan_21449 239 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 289
                    89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.89E-16147205IPR016177DNA-binding domain
PfamPF008475.5E-9147196IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-17148205IPR001471AP2/ERF domain
CDDcd000183.03E-11148206No hitNo description
PROSITE profilePS5103217.794148204IPR001471AP2/ERF domain
SMARTSM003803.3E-32148210IPR001471AP2/ERF domain
CDDcd000181.31E-25239299No hitNo description
SuperFamilySSF541717.85E-17239298IPR016177DNA-binding domain
PfamPF008471.3E-8239289IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-15240297IPR001471AP2/ERF domain
PROSITE profilePS5103215.527240297IPR001471AP2/ERF domain
SMARTSM003802.5E-32240303IPR001471AP2/ERF domain
PRINTSPR003675.2E-6241252IPR001471AP2/ERF domain
PRINTSPR003675.2E-6279299IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MLDLNLNVDW TESTQNVDSA VSFEKFQEGL RHQMAESGTS NSSVVNADGS SNGGGDEDSC  60
STRADDLYTF NFDILKANDV VTRELFPVSG GGTKGESDTP SLSARNGLVD LSFDREGGNG  120
AMKVVQPQVQ PQQPAKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA  180
HAAARAYDRA AIKFRGVDAD INFNLSDYED DLKQMKNLSK EEFVHILRRQ STGFSRGSSK  240
YRGVTLHKCG RWEARMGQFL GKKYIYLGLF DSEVEAARAY DKAAIKCNGR EAVTNFEPST  300
YEGEMKSAAI NEGGSQNLDL NLGIATPGPG PKENWGQLQV PSVPYNMHSG RSSMMQTNVN  360
SGIGNPSLKR LVVNEDRPSV WNSMCPNFFP NEERAERISI DPSKGLPNWA WQTHGQANAT  420
PVPTFSAAAS SGFSISANFP STAIFPTRSM NSVPQSLCFT SSSTPSSNAS EYYYQVKTPQ  480
APP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_21449
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310860.0KT031086.1 Glycine max clone HN_CCL_205 AP2-EREBP transcription factor (Glyma12g07800.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020215051.10.0ethylene-responsive transcription factor RAP2-7 isoform X2
SwissprotQ9SK031e-118RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A151TN500.0A0A151TN50_CAJCA; Ethylene-responsive transcription factor RAP2-7
STRINGGLYMA12G07800.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-119related to AP2.7