PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_21166
Common NameKK1_021795
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GRAS
Protein Properties Length: 580aa    MW: 67277.7 Da    PI: 5.3699
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_21166genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS48.81.3e-15243298156
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlars 56 
                    l++lLl cA+ v ++d++ a+++L+++++++sp+gd++qRla+yf+++L+ar+++ 
  C.cajan_21166 243 LRNLLLMCAQSVYANDNRTANEYLKQIRQNSSPTGDALQRLAHYFANGLEARMVGD 298
                    689**************************************************984 PP
2GRAS271.62.5e-83305577103373
           GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                    +ea++++e+vHiiDf+i +G++Wp L++ L++R++gpp+lRiTg++ p +g   ++++eetg+ La+++++ +vpfe++++++k++e++++e+L++
  C.cajan_21166 305 MEAAAKAETVHIIDFGILYGFHWPMLIKFLSNREGGPPKLRITGIEFPLPGfrPTQKIEETGRHLANYCKRYNVPFEYHAIASKNWETIQVEALQI 400
                    589999******************************************99999****************************99************* PP

           GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                    +++E +aVn+ ++ ++llde+ + +s+r++vL+l+++++P++++ +  + + n++ F +rf eal +y +l+d+ +a +pre+e+r+ +Ere++gr
  C.cajan_21166 401 ERNELVAVNSLMRFENLLDETFHENSPRNAVLHLIRKIKPDIFTQTVINGSFNAPFFTTRFREALFHYYTLYDMCDAVVPRENEWRMLIEREIVGR 496
                    ************************************************************************************************ PP

           GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                    e++nv+aceg+er+er et++kW  r ++aGFk++pl+e+ +++ ++ lr+ + + + v+e+++++++gWk+r L++ S+W
  C.cajan_21166 497 EAMNVIACEGSERIERPETYKKWYIRNTRAGFKQLPLNEELMEKCRSQLREWYHRDFFVDEDNEWMLQGWKGRVLYASSCW 577
                    *****************************************************999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.991217558IPR005202Transcription factor GRAS
PfamPF035144.4E-13243298IPR005202Transcription factor GRAS
PfamPF035148.6E-81305577IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
WVLRLTMEAN TPSDPWLEDN DFSETANFIN QILMEENFDE CPFYDSFTLQ VTEKSFYDAL  60
TGTLPLSPTQ NPLVLTPQAE TTNKNDFSDE NFRELKQRFQ DSAFQFNPQV SQPHLDSSTA  120
TVMPHNKLND GDYVCDFRRG LEEGRRFLPA GSNLVTLKGR KNHERHERDT IEEEEEGRSN  180
KQSALSVADE IDLSEAIDRV SLSSENVCDE QSCFRSGGKG RPKKQGRNAW WMKKGKEKEI  240
VDLRNLLLMC AQSVYANDNR TANEYLKQIR QNSSPTGDAL QRLAHYFANG LEARMVGDGT  300
SAQGMEAAAK AETVHIIDFG ILYGFHWPML IKFLSNREGG PPKLRITGIE FPLPGFRPTQ  360
KIEETGRHLA NYCKRYNVPF EYHAIASKNW ETIQVEALQI ERNELVAVNS LMRFENLLDE  420
TFHENSPRNA VLHLIRKIKP DIFTQTVING SFNAPFFTTR FREALFHYYT LYDMCDAVVP  480
RENEWRMLIE REIVGREAMN VIACEGSERI ERPETYKKWY IRNTRAGFKQ LPLNEELMEK  540
CRSQLREWYH RDFFVDEDNE WMLQGWKGRV LYASSCWVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-3625057926380Protein SCARECROW
5b3h_A6e-3625057925379Protein SCARECROW
5b3h_D6e-3625057925379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_21166
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020214790.10.0scarecrow-like protein 33 isoform X1
RefseqXP_029127111.10.0scarecrow-like protein 33 isoform X2
TrEMBLA0A151TMA00.0A0A151TMA0_CAJCA; Scarecrow-like protein 33 (Fragment)
STRINGGLYMA11G14720.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-156GRAS family protein