PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | C.cajan_19937 | ||||||||
Common Name | KK1_020525 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 354aa MW: 37971.3 Da PI: 9.7078 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.4 | 1.8e-39 | 80 | 140 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ C.cajan_19937 80 QQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 140 7899******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 9.8E-34 | 82 | 138 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.525 | 84 | 138 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-26 | 85 | 138 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 86 | 122 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 354 aa Download sequence Send to blast |
LSLSHIATIN TTISILKRNS RRHTLFEFIL EKKMLGKCEK TVVMNPPTAS NKWTQAQIDD 60 HKASMGRVME KPSQDLLQQQ QQALKCPRCD SSNTKFCYYN NYSLSQPRHF CKACKRYWTR 120 GGTLRNVPVG GGCRKNKRVK RPNGDASATA NSPPSSSTPS ANSNPPSQAH IDSIASSSTS 180 NHININPLFY GLTSNGNMNV PFPRFNLQSQ MNALGLGFSS GVMSSEASDN GYRSGFSTSN 240 SNNNNNSFLS AYSSIFGGSS STCAPSTPVM ASLLSSTLLQ EKFMGGGVKG DQGGNSFQGL 300 AQLEGNNNNG GGGCQNQMEH VGLSDPNSLY WNAATGLGAW SDQPNIGPSV TSLI |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | C.cajan_19937 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-127 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_029126978.1 | 0.0 | dof zinc finger protein DOF1.4 isoform X3 | ||||
TrEMBL | A0A151UAS2 | 0.0 | A0A151UAS2_CAJCA; Dof zinc finger protein DOF1.4 (Fragment) | ||||
STRING | XP_007159343.1 | 1e-136 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4522 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28310.2 | 5e-36 | Dof family protein |