PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_19318 | ||||||||
Common Name | KK1_019877 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | NF-YC | ||||||||
Protein Properties | Length: 150aa MW: 16919.3 Da PI: 9.9887 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 51.4 | 2.3e-16 | 7 | 92 | 13 | 97 |
NF-YC 13 atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 ++ e+P r+kki+ d+dvk++s+ea l+s++ elf+ l+ +s a e+kr+t++ i av+r + + dfl+d+ p C.cajan_19318 7 NAASTVSEFPKGRVKKIMTLDKDVKRVSSEALFLVSRSTELFLQFLAEKSAQVAIEKKRKTVNLEHIRVAVKRHQpTRDFLLDDLP 92 44445679***************************************************************9976489*****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.2E-20 | 9 | 78 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.1E-19 | 14 | 77 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 8.83E-20 | 14 | 80 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MAEEEENAAS TVSEFPKGRV KKIMTLDKDV KRVSSEALFL VSRSTELFLQ FLAEKSAQVA 60 IEKKRKTVNL EHIRVAVKRH QPTRDFLLDD LPPPSQPNKP DKHTTPAARP KSDKPLPGTR 120 RIDQFFRKPE PENPAQAEAQ AQSPIPVDES |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_19318 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020234983.1 | 1e-104 | dr1-associated corepressor | ||||
TrEMBL | A0A151U8Q7 | 1e-102 | A0A151U8Q7_CAJCA; Dr1-associated corepressor | ||||
STRING | GLYMA18G01040.1 | 2e-77 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11105 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 9e-48 | nuclear factor Y, subunit C13 |