PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_18981

Common Name

KK1_019533

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

SRS

Protein Properties

Length: 212aa MW: 23694.3 Da PI: 7.9161

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_18981	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	90.8	3.1e-28	17	78	5	66
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaas 66 +++CqdCGnqakk+C+++RCRtCCk++gf+C+th+kstW pa+krr++ ++ + + ++ + C.cajan_18981 17 GSKCQDCGNQAKKECSYSRCRTCCKNKGFQCQTHIKSTWTPADKRRHKDKEPHHFQGHNIPQ 78 569********************************************988777666555444 PP
2	DUF702	76.1	9.7e-24	90	143	102	155
DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGleek 155 ++P+ +s+a+frcv+v+s+dd+ +e+aYqt v+igGhvf+G+LydqG++++ C.cajan_18981 90 ELKFPAATNSMAIFRCVQVRSMDDAVNEIAYQTCVNIGGHVFRGLLYDQGPDDQ 143 335************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.9E-43	17	141	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.3E-24	19	61	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.5E-21	92	140	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MRRATQGEEE EEVVLRGSKC QDCGNQAKKE CSYSRCRTCC KNKGFQCQTH IKSTWTPADK 60 RRHKDKEPHH FQGHNIPQNH NQINPCSGLE LKFPAATNSM AIFRCVQVRS MDDAVNEIAY 120 QTCVNIGGHV FRGLLYDQGP DDQSYNNNNR GESSMGLVGQ QQNLGVVNNS SINTRDSSGA 180 SATMVSSGHD ETLLTSPPYP FPLMPYFSYP RS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_18981

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020219770.1	1e-161	protein SHI RELATED SEQUENCE 3
Swissprot	Q9SJT8	2e-43	SRS3_ARATH; Protein SHI RELATED SEQUENCE 3
TrEMBL	A0A151TCX7	1e-160	A0A151TCX7_CAJCA; Uncharacterized protein
STRING	XP_007135936.1	1e-93	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9969	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	8e-46	SHI-related sequence3