PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_18765 | ||||||||
Common Name | KK1_019312 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 150aa MW: 17113.1 Da PI: 7.3481 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.7 | 3e-09 | 2 | 26 | 21 | 47 |
TT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 21 ggtWktIartmgkgRtlkqcksrwqky 47 + W++Ia +++ gRt +++k++w++y C.cajan_18765 2 CR-WSLIAGRLP-GRTSNDVKNYWNTY 26 45.*********.************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00249 | 3.8E-7 | 1 | 26 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.535 | 1 | 31 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-11 | 2 | 28 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.9E-7 | 2 | 30 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.50E-5 | 3 | 27 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
GCRWSLIAGR LPGRTSNDVK NYWNTYIRRK ELSHTKEKNV KQKEVETKVK SHEVIRPVPQ 60 TLSKTSPWLR GKFINSSKVG VSEAGADSLG SENWWKTLLD DKEDNARNSN TCFFGVEDGA 120 LDFWTQELTS IDCDFLAEGG INWSDFLLRD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_18765 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020219743.1 | 1e-104 | transcription factor MYB114 | ||||
TrEMBL | A0A151TCE2 | 1e-106 | A0A151TCE2_CAJCA; Transcription repressor MYB6 (Fragment) | ||||
STRING | GLYMA09G36983.1 | 9e-61 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 6e-17 | myb domain protein 6 |