PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_18631
Common NameKK1_019175
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C2H2
Protein Properties Length: 425aa    MW: 44863.5 Da    PI: 8.5952
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_18631genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-052244123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C++C+k F r  nL+ H r H
  C.cajan_18631 22 FVCEICNKGFQRDQNLQLHRRGH 44
                   89*******************88 PP
2zf-C2H213.80.0001898120123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C+ C+k +  +s+ k H++t+
  C.cajan_18631  98 WQCERCSKKYAVHSDWKAHMKTC 120
                    58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-52144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.71E-72144No hitNo description
PROSITE profilePS5015710.9492244IPR007087Zinc finger, C2H2
SMARTSM003550.0172244IPR015880Zinc finger, C2H2-like
PfamPF121716.5E-52244IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002802444IPR007087Zinc finger, C2H2
SMARTSM003552206393IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-486119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.71E-793119No hitNo description
SMARTSM003558498118IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0090502Biological ProcessRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0003676Molecular Functionnucleic acid binding
GO:0004526Molecular Functionribonuclease P activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MPDPDAEVIA LSPKTLLATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRGSKEPRK  60
KAYVCPEPSC VHHNPARALG DLTGIKKHFC RKHGEKKWQC ERCSKKYAVH SDWKAHMKTC  120
GTREYRCDCG TLFSRRDSFI THRAFCDVLA QESAMAQVQV QAQAQGAGNS NSNSNDVVAS  180
SPPTPPLTPS ASVVSPTLSI QSSEIPENPT KLSPTSSSAT CFVNAVTSTA TVFASVLASP  240
ATTVTTPSQS PSSACSFSNL MSNLECPNTT SLSLSTPLYL SNNDPPQYTA SPQPALSATA  300
LLQKAAQMGA SNASLLRGLG LATTSLSSSF GKDEGVNTSA ATSLQWNGQV KQENEPLGLG  360
LPCGSGGVTD VMMGPSAPFV GQPMTRDLLG LSIGGGASRG GLSALLSSFG GNFDASPGEG  420
GVHHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-3394154363Zinc finger protein JACKDAW
5b3h_F3e-3394154363Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14860KLRQRGSKEPRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_18631
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020218871.10.0zinc finger protein GAI-ASSOCIATED FACTOR 1
SwissprotQ9LVQ71e-120IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A151TC370.0A0A151TC37_CAJCA; Zinc finger protein MAGPIE
STRINGGLYMA06G03630.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-100C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]