PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_18602 | ||||||||
Common Name | KK1_019145 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB | ||||||||
Protein Properties | Length: 214aa MW: 23874.3 Da PI: 9.9017 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.3 | 8.4e-19 | 31 | 76 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v+++G+++W++I+r++ gR++k+c++rw + C.cajan_18602 31 KGPWSAEEDRILTRLVERYGPRNWSLISRYIK-GRSGKSCRLRWCNQ 76 79*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 58.6 | 1.4e-18 | 85 | 127 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++++Ed+ ++ a++q+G++ W+tIar ++ gRt++ +k++w++ C.cajan_18602 85 PFSPQEDQTIIAAHAQYGNR-WATIARLLP-GRTDNAVKNHWNST 127 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.778 | 26 | 81 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.28E-32 | 28 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.2E-17 | 30 | 79 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-18 | 31 | 76 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-25 | 32 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.10E-16 | 33 | 75 | No hit | No description |
PROSITE profile | PS51294 | 21.982 | 82 | 132 | IPR017930 | Myb domain |
SMART | SM00717 | 5.9E-16 | 82 | 130 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-24 | 85 | 131 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-15 | 85 | 127 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.67E-13 | 85 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MNRSSSSTTS SSDSCSSDSN HRNTNNPDRI KGPWSAEEDR ILTRLVERYG PRNWSLISRY 60 IKGRSGKSCR LRWCNQLSPS VQHRPFSPQE DQTIIAAHAQ YGNRWATIAR LLPGRTDNAV 120 KNHWNSTLKR RANQGAASSS APSLHSHFQD DPLTALTLAP PGIASAAAPQ EPLPDHRPSP 180 ETAPPAFWDM MRDVIAREVR EYVSSNFSDN SAFH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-43 | 27 | 133 | 3 | 109 | B-MYB |
1h88_C | 4e-43 | 26 | 132 | 53 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-43 | 26 | 132 | 53 | 159 | MYB PROTO-ONCOGENE PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_18602 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020219044.1 | 1e-157 | transcription factor MYB77 | ||||
Swissprot | Q9SN12 | 5e-60 | MYB77_ARATH; Transcription factor MYB77 | ||||
TrEMBL | A0A151TBZ2 | 1e-156 | A0A151TBZ2_CAJCA; Transcription factor MYB44 | ||||
STRING | GLYMA06G04010.1 | 1e-113 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5074 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 9e-61 | myb domain protein 77 |
Publications ? help Back to Top | |||
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