PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_18402

Common Name

KK1_018938

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

NAC

Protein Properties

Length: 322aa MW: 36991.9 Da PI: 7.8601

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_18402	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.7	7.6e-56	20	146	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lp+GfrFhPtdeel+++yL +kv ++ + + ++i e+d++k+ePwdLp+++k +ekewyfF+ rd+ky+tg+r+nrat +gyWkatgkdke+++ C.cajan_18402 20 LPAGFRFHPTDEELITYYLSQKVLDSCFCA-RAIGEADLNKCEPWDLPRMAKMGEKEWYFFCVRDRKYPTGQRTNRATGAGYWKATGKDKEIHK-A 113 799*********************9888.89***********988999***********************************9.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 ++l+g+kktLvfykgrap+gekt+Wvmheyrle C.cajan_18402 114 KALIGMKKTLVFYKGRAPQGEKTNWVMHEYRLE 146 99***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-63	10	170	IPR003441	NAC domain
PROSITE profile	PS51005	58	20	170	IPR003441	NAC domain
Pfam	PF02365	1.1E-29	21	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MEAMESNQRN IMEEQKMLDL PAGFRFHPTD EELITYYLSQ KVLDSCFCAR AIGEADLNKC 60 EPWDLPRMAK MGEKEWYFFC VRDRKYPTGQ RTNRATGAGY WKATGKDKEI HKAKALIGMK 120 KTLVFYKGRA PQGEKTNWVM HEYRLESEHP VHNLPKKAMN DWAICRIFQK GNGGKKMQIP 180 GLVRFSSFRK DMPPLMDSSP YNIDSFDNTM FASKYSSNNP SDIFSPASWN FTKPAPTVSH 240 QSLQFGNSQC PDYYMLQDHS MLEMLIENHG SSIQKAQDKD SFDADMSSVM YSNEMLQRSF 300 GNQEYPPASV GHVYTSSGLW GF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-54	18	176	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-54	18	176	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-54	18	176	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-54	18	176	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-54	18	176	18	174	NAC domain-containing protein 19
3swm_B	2e-54	18	176	18	174	NAC domain-containing protein 19
3swm_C	2e-54	18	176	18	174	NAC domain-containing protein 19
3swm_D	2e-54	18	176	18	174	NAC domain-containing protein 19
3swp_A	2e-54	18	176	18	174	NAC domain-containing protein 19
3swp_B	2e-54	18	176	18	174	NAC domain-containing protein 19
3swp_C	2e-54	18	176	18	174	NAC domain-containing protein 19
3swp_D	2e-54	18	176	18	174	NAC domain-containing protein 19
4dul_A	1e-54	18	176	15	171	NAC domain-containing protein 19
4dul_B	1e-54	18	176	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_18402

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020219276.1	0.0	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-108	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A151TBD8	0.0	A0A151TBD8_CAJCA; Protein CUP-SHAPED COTYLEDON 2
STRING	GLYMA13G05540.1	1e-179	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-111	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]