PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_16997

Common Name

Dof23, KK1_017502

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

Dof

Protein Properties

Length: 282aa MW: 31458.2 Da PI: 8.5635

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_16997	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	113.1	1.2e-35	42	101	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + + lkcprCds ntkfCyynny+ +qPr+fC+aC+r+WtkGG+lrnvPvGggr++++++ C.cajan_16997 42 QPEPLKCPRCDSINTKFCYYNNYNKAQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRAK 101 56889************************************************8777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.9E-31	45	99	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.214	46	100	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	48	84	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	6.0E-21	48	99	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MGLSSKQVSN RGLDWKQTLL QAQNLELPKP PPMRKQQQQT QQPEPLKCPR CDSINTKFCY 60 YNNYNKAQPR HFCRACKRHW TKGGTLRNVP VGGGRKNKRA KKSTTQTTTT ATATTSISTT 120 TSNANMDGEL STRIKVPPLA VDDHHKTIPS SLYLPQQNLM SSKDSEDKDF GIGNGIFLSS 180 TAPYPQNQGL LFPFTTSNSF DTNTCAISTS LRSSSVYNYG EEFKIMEEPT INSVMPGTNT 240 QPWEIAATSS GLEMSNYWSW EDIDSLVSTD LNVPWDDSDI KP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_16997

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP662915	0.0	KP662915.1 Cajanus cajan Dof23 (Dof23) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020220883.1	0.0	dof zinc finger protein DOF1.4
TrEMBL	A0A0K8K5U9	0.0	A0A0K8K5U9_CAJCA; Dof protein
STRING	GLYMA15G07730.1	1e-158	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5107	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	4e-28	Dof family protein

Publications ? help Back to Top
Malviya N, et al. Genome wide in silico characterization of Dof gene families of pigeonpea (Cajanus cajan (L) Millsp.). Mol. Biol. Rep., 2015. 42(2): p. 535-52 [PMID:25344821]