PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_15613 | ||||||||
Common Name | KK1_016062 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB | ||||||||
Protein Properties | Length: 302aa MW: 34760.7 Da PI: 7.9453 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.7 | 1.1e-17 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll +++ +G g+W++ a++ g++Rt+k+c++rw++yl C.cajan_15613 19 RGPWTLEEDNLLSQYISNHGEGRWNLLAKRSGLKRTGKSCRLRWLNYL 66 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.5 | 5.4e-17 | 72 | 115 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ ++eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ C.cajan_15613 72 RGNLSPEEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 115 7899******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.105 | 14 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.95E-30 | 17 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-15 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-16 | 19 | 66 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-23 | 20 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.07E-11 | 21 | 66 | No hit | No description |
PROSITE profile | PS51294 | 26.091 | 67 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-15 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-16 | 72 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-24 | 74 | 120 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.56E-12 | 76 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MSTSKSVSSS SEDENELRRG PWTLEEDNLL SQYISNHGEG RWNLLAKRSG LKRTGKSCRL 60 RWLNYLKPDV KRGNLSPEEQ LLILELHSKW GNRWSKIAQH LPGRTDNEIK NYWRTRIQKQ 120 ARHLKINSDS REFQELVRRF WIPRLLQKVK ESPSSSTMSI QNQAIPLPQG GVSHSSVGTM 180 PSQTPWQGLC MNEAGPTYSD SDHNNGSCIS FSESANVPNV PQHFGHTINQ FHDFGNFTYD 240 GYHENNNAYE MDTFKTPTAR VAEDVQYPIA DCQMAGANWV NNDFACSMWN MDEFWQFSKL 300 QK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 16 | 121 | 4 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_15613 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX090252 | 0.0 | JX090252.1 Glycine max ecotype Gwangan Myb transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020220915.1 | 0.0 | transcription factor MYB62 | ||||
TrEMBL | A0A151T3F5 | 0.0 | A0A151T3F5_CAJCA; Transcription factor MYB21 | ||||
STRING | GLYMA05G35050.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1639 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 5e-80 | myb domain protein 62 |