PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_14321 | ||||||||
Common Name | KK1_014749 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 229aa MW: 26346.2 Da PI: 9.8283 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.5 | 1.2e-18 | 80 | 134 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq +Le+ F+ + +++ ++++ LA++l+L+ rqV vWFqNrRa+ k C.cajan_14321 80 RKKLKLTKEQSATLEDIFKLHTTLNPAQKQALAEQLNLKHRQVEVWFQNRRARTK 134 78899************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 111 | 7.8e-36 | 80 | 169 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk++l+keq+++LE+ F+ +++L+p +K++la++L+l+ rqv+vWFqnrRARtk+kq+E+d e+Lk++y++l++en rL++e +eLr++ C.cajan_14321 80 RKKLKLTKEQSATLEDIFKLHTTLNPAQKQALAEQLNLKHRQVEVWFQNRRARTKLKQTEVDREFLKKCYEKLTNENLRLKRELQELRAQ 169 69*************************************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.31E-18 | 69 | 137 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.086 | 76 | 136 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-14 | 78 | 140 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.3E-16 | 80 | 134 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.26E-14 | 80 | 137 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-17 | 80 | 134 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 111 | 134 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 5.4E-16 | 136 | 179 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MEDDETCITN LSLGLGMRGH VPKKENQRVP CLNLTFHLSP KGEEAIHMVD QQQRDDHHDK 60 AKGFCLKHPN EISPDDSNNR KKLKLTKEQS ATLEDIFKLH TTLNPAQKQA LAEQLNLKHR 120 QVEVWFQNRR ARTKLKQTEV DREFLKKCYE KLTNENLRLK RELQELRAQN IGATPMYIQL 180 SKAKTLSICS SCGELLKPSE ENKATISKVI RNSKHKLQTK VGLEGIMNS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 136 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_14321 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031172 | 1e-117 | KT031172.1 Glycine max clone HN_CCL_117 homeodomain/HOMEOBOX transcription factor (Glyma15g18320.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020224186.1 | 1e-170 | homeobox-leucine zipper protein HAT22 | ||||
Swissprot | A2XE76 | 9e-45 | HOX19_ORYSI; Homeobox-leucine zipper protein HOX19 | ||||
Swissprot | Q8GRL4 | 9e-45 | HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19 | ||||
TrEMBL | A0A151SWZ1 | 1e-168 | A0A151SWZ1_CAJCA; Homeobox-leucine zipper protein HOX19 | ||||
STRING | GLYMA09G07051.1 | 1e-107 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5664 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 5e-47 | HD-ZIP family protein |