PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_13551 | ||||||||
Common Name | KK1_013967 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | WOX | ||||||||
Protein Properties | Length: 225aa MW: 25266.2 Da PI: 8.2428 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.6 | 2.5e-19 | 18 | 77 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++tkeq+ +Le+l+++ r+p+a++++++ ++l +++ ++V++WFqN++a++++ C.cajan_13551 18 SRWSPTKEQISTLENLYKQgIRTPNASQIQHIVTRLsaygHIEGKNVFYWFQNHKARQRQ 77 6*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 110.5 | 9.3e-36 | 17 | 78 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +RW+Pt+eQi Le+lyk+G+rtPn+++iq+i ++L++yG+ie+kNVfyWFQN+kaR+rqk C.cajan_13551 17 VSRWSPTKEQISTLENLYKQGIRTPNASQIQHIVTRLSAYGHIEGKNVFYWFQNHKARQRQK 78 68***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.495 | 13 | 78 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.84E-12 | 14 | 83 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.5E-4 | 15 | 82 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.6E-17 | 18 | 77 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.1E-8 | 18 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.71E-5 | 19 | 78 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MESEAAEVEM RRRGHSVSRW SPTKEQISTL ENLYKQGIRT PNASQIQHIV TRLSAYGHIE 60 GKNVFYWFQN HKARQRQKLK LKQQNVGSSN HFLHASQPIC QNVVCGPYCL QQSGTGFYSQ 120 QPPKVLASGV SSSIVTFGLQ RMCDGSQRNE LLQQDYNSRT SNHKALTLFP LHPTSILEEK 180 SSQVPSLASF CEGAIDTSSA AHINEDAHPE NLPFFDFFTS SHVSD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_13551 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020223431.1 | 1e-141 | WUSCHEL-related homeobox 1 | ||||
TrEMBL | A0A151SUS2 | 1e-168 | A0A151SUS2_CAJCA; WUSCHEL-related homeobox 2 | ||||
STRING | GLYMA13G41000.1 | 8e-82 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8256 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 9e-34 | WUSCHEL related homeobox 2 |