PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_13478

Common Name

KK1_013890

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

C2H2

Protein Properties

Length: 338aa MW: 38064.8 Da PI: 7.9019

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_13478	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.8e-05	172	191	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ C.cajan_13478 172 FSCPLCFKTFNRYNNMQMHM 191 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.8E-5	172	191	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.66	172	199	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	174	194	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.44E-5	238	276	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.3E-4	243	276	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0090502	Biological Process	RNA phosphodiester bond hydrolysis, endonucleolytic
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0004526	Molecular Function	ribonuclease P activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MTHPYCSNDF NAWFDLNSPC LFSSSSSPCY FPSTTYHHHS FTSGISFTQH QSSPSSHPPK 60 EALPLLNLSP PRGEDLESSF SAMKVNNNMK EKELSIMSSN DNSMDDDTVT VALHLGLPST 120 TSADLTSNLY STEISDKEEK ATVASEYSPG RINKGQYWIP TPAQILIGPT QFSCPLCFKT 180 FNRYNNMQMH MWGHGSQYRK GPESLRGTQP TAMLRLPCYC CAPGCKNNID HPRAKPLKDF 240 RTLQTHYKRK HGIKPFMCRK CCKAFAVRGD WRTHEKNCGK LWYCSCGSDF KHKRSLKDHI 300 KAFGNGHRAC GIDHCLDQDD EAGSEIEQEN ESLISSHS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00197	DAP	Transfer from AT1G51220	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_13478

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT097140	0.0	BT097140.1 Soybean clone JCVI-FLGm-21L15 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020224038.1	0.0	zinc finger protein WIP2
Swissprot	Q8W031	1e-129	ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBL	A0A151SUK8	0.0	A0A151SUK8_CAJCA; Protein TRANSPARENT TESTA 1
STRING	GLYMA15G03830.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-126	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610]