PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_13005
Common NameKK1_013406
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HD-ZIP
Protein Properties Length: 283aa    MW: 31817.1 Da    PI: 8.5658
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_13005genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89.1e-19141195256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    rk+ ++tkeq   Le+ F+++++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  C.cajan_13005 141 RKKLRLTKEQSALLEDSFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 195
                    788899***********************************************98 PP
2HD-ZIP_I/II125.22.9e-40141230191
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                    +kk+rl+keq++lLE+sF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l
  C.cajan_13005 141 RKKLRLTKEQSALLEDSFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELK-AL 230
                    69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-18120198IPR009057Homeodomain-like
SuperFamilySSF466895.01E-19131198IPR009057Homeodomain-like
PROSITE profilePS5007117.653137197IPR001356Homeobox domain
SMARTSM003896.1E-16139201IPR001356Homeobox domain
PfamPF000464.0E-16141195IPR001356Homeobox domain
CDDcd000861.00E-16141198No hitNo description
PROSITE patternPS000270172195IPR017970Homeobox, conserved site
PfamPF021839.0E-10197231IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.1E-24197240IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGLHQDANTS GLHLVLGLSL TATTKETAPS TKPDDHLIKP TPSKPYYSSN EPSLTLGLSG  60
ESNHVAKLVP RNNVVANNKV YCEDPLELSR QTSPHSVVSS FSTGRVVKRE RDLSCEDIEV  120
EVEERVSSRV SDEDEDGNNA RKKLRLTKEQ SALLEDSFKQ HSTLNPKQKQ ALARQLNLRP  180
RQVEVWFQNR RARTKLKQTE VDCEFLKKCC ETLTDENRRL KKELQELKAL KLAQPLYMPM  240
PAATLTMCPS CERLNDNASN KSPFSMAPKP HFYNPFANPS AAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189197RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_13005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0994350.0BT099435.1 Soybean clone JCVI-FLGm-23N2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020217069.10.0homeobox-leucine zipper protein HAT22
SwissprotP466049e-98HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A151TJB60.0A0A151TJB6_CAJCA; Homeobox-leucine zipper protein HAT22
STRINGGLYMA11G04840.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-81HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]