PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_12343
Common NameKK1_012719
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HD-ZIP
Protein Properties Length: 786aa    MW: 87483.1 Da    PI: 5.6141
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_12343genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.33.6e-2080135156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k
  C.cajan_12343  80 KKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHDLGLKPRQVKFWFQNRRTQMK 135
                    688899***********************************************998 PP
2START151.47.5e-482805042206
                    HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
          START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv............dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                    la + ++elvk+ + +ep+W +ss  e + evl  +e ++              ++ea r+s+vv+m++++lv  +ld   +W e ++    +a+t
  C.cajan_12343 280 LAASSMAELVKMCQTNEPLWIRSS--ESEREVLNFEEHARMftwpqnlkhrseLRTEATRDSAVVIMNSVTLVDAFLDAQ-KWMELFPtivsRAKT 372
                    577899******************..777777777766666788888999999***************************.9*999999999**** PP

                    EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
          START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                    ++ issg      g+lqlm+ae+q+lsplv+ R+  f+Ry++q  ++g+w+ivd  vds q++  ++s+ R   + Sg++i++++ng+s+vtwveh
  C.cajan_12343 373 VQIISSGasghasGTLQLMYAEFQVLSPLVStRETHFLRYCQQnAEEGTWAIVDFPVDSFQQNF-HPSYPRYCIRSSGCVIQDMPNGYSRVTWVEH 467
                    **************************************************************99.9****************************** PP

                    EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
          START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                    + ++++ +h+++   v +g+a+ga++w+  lqrqce+
  C.cajan_12343 468 AKVEEKPVHQIFCNYVYTGMAFGAQRWLGVLQRQCER 504
                    ***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.88E-1971138IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-2173142IPR009057Homeodomain-like
PROSITE profilePS5007116.79577137IPR001356Homeobox domain
SMARTSM003891.3E-1878141IPR001356Homeobox domain
CDDcd000861.60E-1780138No hitNo description
PfamPF000469.3E-1880135IPR001356Homeobox domain
PROSITE patternPS000270112135IPR017970Homeobox, conserved site
PROSITE profilePS5084843.446270507IPR002913START domain
SuperFamilySSF559612.47E-32271506No hitNo description
CDDcd088753.10E-112274503No hitNo description
SMARTSM002349.8E-32279504IPR002913START domain
PfamPF018521.5E-40280504IPR002913START domain
Gene3DG3DSA:3.30.530.204.3E-5342467IPR023393START-like domain
SuperFamilySSF559612.61E-19522761No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    Send to blast
MYGDCQVMSS MGGNTDNLFS SSIQNSNFNF IPTMPFQPFP SLKEEDVLLR GKEEMESGSG  60
SEQVEDKSGN EQESEQPSKK KRYHRHTARQ IQEMEALFKE CPHPDDKQRL KLSHDLGLKP  120
RQVKFWFQNR RTQMKAQQDR ADNVILRAEN ETLKSENYRL QAALRNVMCP NCGGPCIMGA  180
DLGLDEHQLR IENARLREEL ERMCCLTSRY SGRSIQTMGA GPTLMAPSLD LDMNIYPRHF  240
ADSIAPSTEM IPVPMLPPEA SPFAESGVLM EEEKSLALDL AASSMAELVK MCQTNEPLWI  300
RSSESEREVL NFEEHARMFT WPQNLKHRSE LRTEATRDSA VVIMNSVTLV DAFLDAQKWM  360
ELFPTIVSRA KTVQIISSGA SGHASGTLQL MYAEFQVLSP LVSTRETHFL RYCQQNAEEG  420
TWAIVDFPVD SFQQNFHPSY PRYCIRSSGC VIQDMPNGYS RVTWVEHAKV EEKPVHQIFC  480
NYVYTGMAFG AQRWLGVLQR QCERVASLMA RNISDLGVIP SPEARKNMMK LAQRMIKTFG  540
LNMSTSGGQS WTAISDSPED TVRITTRKVT EPGQPNGVIL SAVSTTWLPY SHTRVFDLLR  600
DERHRSQMDA LSNGNSLNEV AHIANGSHPG NCISLLRINV ASNSSQNVEL MLQESCTDQS  660
GSLVVYTTID VDSIQLAMSG EDPSCIALLP QGFMIVPMIS SPNVDTSTDA NSSEAPPSVN  720
SGCLLTMGLQ VLASTIPSAK LNLSSVTAIN NHLCNTLHQI EAALSSSHEN STFLCNEPAT  780
GAPLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_12343
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-139AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020217931.10.0homeobox-leucine zipper protein ROC3
RefseqXP_020217932.10.0homeobox-leucine zipper protein ROC3
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A151THF90.0A0A151THF9_CAJCA; Homeobox-leucine zipper protein ROC3
STRINGXP_007158253.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109463036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7