PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_12242 | ||||||||
Common Name | KK1_012616 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | bHLH | ||||||||
Protein Properties | Length: 195aa MW: 21804.6 Da PI: 11.2569 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.4 | 2e-11 | 34 | 80 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+E+rRR riN +e+Lr +lP++ K +Ka++L ++++ +k+L C.cajan_12242 34 KKHSEAEKRRRTRINGQYETLRNILPNL-----IKRDKASVLAETIKQVKEL 80 68*************************9.....69***********999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.754 | 31 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.45E-9 | 34 | 84 | No hit | No description |
Pfam | PF00010 | 5.9E-9 | 34 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.0E-14 | 35 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.27E-13 | 35 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-9 | 37 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 3.91E-4 | 122 | 172 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MIRGSFPHPF ISRTYKTSFL KPRSKAEIKL LAAKKHSEAE KRRRTRINGQ YETLRNILPN 60 LIKRDKASVL AETIKQVKEL KKKVTKLEED NSANPSKDVK FPSGADKLNL GKCNNEGLVK 120 ATLSCEDSPR LMSSISRALG SVKTRVVKAE IVSVGGRTRS VLWVQGIGND GLGMLKSTLK 180 VAMHKPAFKM RRFTQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_12242 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020216006.1 | 1e-141 | transcription factor bHLH131 | ||||
Swissprot | P0CB25 | 1e-41 | BH131_ARATH; Transcription factor bHLH131 | ||||
TrEMBL | A0A151TH02 | 1e-140 | A0A151TH02_CAJCA; Transcription factor bHLH131 family | ||||
STRING | GLYMA01G02930.2 | 1e-106 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12611 | 30 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38070.1 | 5e-32 | bHLH family protein |