PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_12188
Common NameKK1_012560
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ERF
Protein Properties Length: 320aa    MW: 35970.8 Da    PI: 4.599
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_12188genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.7e-2091141155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    ++++GVr+++ +g+W+AeIrdp   g++ r +lg+++taeeAa  +++a+ +l+g
  C.cajan_12188  91 KKFRGVRQRP-WGKWAAEIRDP---GRKVRLWLGTYDTAEEAAMVYDNAAIRLRG 141
                    59********.**********8...556*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.64E-3391148No hitNo description
SuperFamilySSF541711.37E-2192149IPR016177DNA-binding domain
SMARTSM003802.1E-3792155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-3092149IPR001471AP2/ERF domain
PROSITE profilePS5103223.49992149IPR001471AP2/ERF domain
PfamPF008472.5E-1392141IPR001471AP2/ERF domain
PRINTSPR003673.3E-1093104IPR001471AP2/ERF domain
PRINTSPR003673.3E-10115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEESILCKER VTKKVLSPND SQTNSRIVRI SYTDPDATDS SSDDEGTPVL RHRMKRFVNQ  60
IQIQTAASNS RKRPAADTSS CRRQVKLHGG KKFRGVRQRP WGKWAAEIRD PGRKVRLWLG  120
TYDTAEEAAM VYDNAAIRLR GPDALTNFVT APAREAAGMK MGAVKEEASG CGYEWSEDNC  180
EEQHNLSSPT SVLHFRSEER SESEKCEQGE GETEATLFDE TGEFFSVDNM PAWDDVFNFE  240
APQYPLLFQD DEPLHPDSHL LDQTLPFSPE QAFTHSSILL ADSLIDFDKA CSPSSTSQLD  300
PYDYFQDILF ASGSDPLVRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2190158369ATERF1
3gcc_A3e-2190158369ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_12188
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310785e-45KT031078.1 Glycine max clone HN_CCL_184 AP2-EREBP transcription factor (Glyma04g41740.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020217654.10.0pathogenesis-related genes transcriptional activator PTI6
SwissprotQ9SUE33e-49CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A151TGX60.0A0A151TGX6_CAJCA; Ethylene-responsive transcription factor CRF4
STRINGXP_007137563.11e-141(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.18e-43cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]