PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_11546
Common NameKK1_011887
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 632aa    MW: 71052.3 Da    PI: 7.0189
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_11546genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.53.1e-15434480455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h + ErrRR+++N++f +Lr+++P+      +K +K++iL  A+eY+k+L+
  C.cajan_11546 434 NHVMSERRRRAKLNERFLTLRSMVPSI-----TKDDKVSILDDAIEYLKKLE 480
                    799***********************7.....6****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.4E-4915192IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.863430479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-18432493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.11E-15433484No hitNo description
Gene3DG3DSA:4.10.280.106.8E-18434490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-12434480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-14436485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.558564632IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
VATLQSKKMV PDNMKKQLAL AVRSIHWSYA IFWTDSTTQP GMLSWGEGYY NGDIKTRKTS  60
QGVELNSDQI GLQRSEQLRE LFKSLKTAEI SPQTKRPSAA LSPEDLTDAE WYYLVCMSFI  120
FNIGQGLPGR TLAKGQPIWL NSAHSADCRV FSRSLLAKTV VCFPFMEGVI ELGTTEQVSE  180
DLSIIHQIET SFLNSLHVNV PNKSGATLKS RDQEDLAYVS FDHNAYNVEL TPEVGYDIAN  240
TTSPNGSSNA LQANQPLHET FMVERITSGT SQVQSWQVMD DELSNCVHNS MNSSDCISQT  300
LASPEKIAFT PKCNNPSDPC ARDLQKYNNP KMTVVDPRSD DWHYQRVLST LLKSSDQLLM  360
GVHLQKLHQE SSFVSWRKGG PVDCQWPRTG TSQKLLKKVL FEVPQMHLDG LHESQEENDY  420
KEGMRVEADE IGMNHVMSER RRRAKLNERF LTLRSMVPSI TKDDKVSILD DAIEYLKKLE  480
RRIKVLEAQR GVTDIETETR RLPQDMVERT SDHYFSKSNN GKKPVAKKRK VSGVDETGRE  540
INSDVPKGSY ANDVTVSTSD NEIVIEMKCP SRAGKLLEIM EAVNSFNVDF NSVQSTEADG  600
NLYLTIKSVF TRASIATAKR IKQALQKVAS KS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-16121927192Transcription factor MYC3
4rqw_B3e-16121927192Transcription factor MYC3
4rs9_A3e-16121927192Transcription factor MYC3
4yz6_A3e-16121927192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_11546
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020217856.10.0transcription factor GLABRA 3
TrEMBLA0A151TF170.0A0A151TF17_CAJCA; Transcription factor GLABRA 3 (Fragment)
STRINGGLYMA08G01810.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-180bHLH family protein