PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_11305

Common Name

KK1_011632

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

C2H2

Protein Properties

Length: 629aa MW: 70444.8 Da PI: 8.1252

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_11305	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.6e-05	74	95	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ n++rHir+H C.cajan_11305 74 KCDKCTREFCSPINYRRHIRVH 95 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.827	73	100	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	75	96	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 629 aa Download sequence Send to blast
MPIAKLRASG TPDVMKTEDR IDTIIRQAIG KEPFVSFPRA SDSPVQWIQL LHALDPQEFP 60 GWPLLSPLKV QLQKCDKCTR EFCSPINYRR HIRVHHRLKK IDKDFTKSRD LLGAYWDKLS 120 VEEAKEVVSF ENVALEEVPG SSILKSLTTL IQNQGFYSLP QYYLMAGAAL LDIVQSKPSS 180 FPISSQELFS ILDDASEKTC LCGTAVSMQR YVFDGEVGKI GLEPKNLVAC TSFLLEQKLV 240 KAWLADKDAE ALRCQKQLVE EEEAAQKRQA EILERKRLKK IRQKEQKARE QRHKSEAEIK 300 DNIDIAVKAL SLAEASLDTY NFEDHNPNTF ADNSASDVSF QCPDTNEEIN GDTHSEHDSV 360 TDQNIEGDSA NGPKHQRLAV ARQQGLPKSP RPVATGLHTN HNSSMSKPEV IQKYGTHCDQ 420 KASTIANGGK VWSRKSKTEI DKVVLKSIKE KESDQVKNQE VLIGSISVNL GNCSQSDGNM 480 VASQENCVVE NVAKQNSSRD KPMKTDSILS GNNRPTVKLW RPVSRLETKD PLPVQSDGGG 540 NLGFEKNFPH VEDTEHPESL RLFCRAAKAF LQKRWDEAIA SEDVTVLVCS DTESSDNRTP 600 RVTKSKPRLK KSEKGIKTKY IPKQKTVIT

Sequence ? help Back to Top

Protein Sequence Length: 629 aa Download sequence Send to blast

MPIAKLRASG TPDVMKTEDR IDTIIRQAIG KEPFVSFPRA SDSPVQWIQL LHALDPQEFP  60
GWPLLSPLKV QLQKCDKCTR EFCSPINYRR HIRVHHRLKK IDKDFTKSRD LLGAYWDKLS  120
VEEAKEVVSF ENVALEEVPG SSILKSLTTL IQNQGFYSLP QYYLMAGAAL LDIVQSKPSS  180
FPISSQELFS ILDDASEKTC LCGTAVSMQR YVFDGEVGKI GLEPKNLVAC TSFLLEQKLV  240
KAWLADKDAE ALRCQKQLVE EEEAAQKRQA EILERKRLKK IRQKEQKARE QRHKSEAEIK  300
DNIDIAVKAL SLAEASLDTY NFEDHNPNTF ADNSASDVSF QCPDTNEEIN GDTHSEHDSV  360
TDQNIEGDSA NGPKHQRLAV ARQQGLPKSP RPVATGLHTN HNSSMSKPEV IQKYGTHCDQ  420
KASTIANGGK VWSRKSKTEI DKVVLKSIKE KESDQVKNQE VLIGSISVNL GNCSQSDGNM  480
VASQENCVVE NVAKQNSSRD KPMKTDSILS GNNRPTVKLW RPVSRLETKD PLPVQSDGGG  540
NLGFEKNFPH VEDTEHPESL RLFCRAAKAF LQKRWDEAIA SEDVTVLVCS DTESSDNRTP  600
RVTKSKPRLK KSEKGIKTKY IPKQKTVIT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_11305

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	4e-56	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020216071.1	0.0	uncharacterized protein LOC109799844
TrEMBL	A0A151TEA6	0.0	A0A151TEA6_CAJCA; Uncharacterized protein
STRING	GLYMA16G30100.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4517	27	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-142	C2H2-like zinc finger protein