PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_10940 | ||||||||
Common Name | KK1_011262 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 189aa MW: 21932.4 Da PI: 5.0071 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 42.6 | 1e-13 | 1 | 39 | 18 | 56 |
HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +Fe+++ + +++ + Ak+lgL+ rqV +WFqN+Ra++k C.cajan_10940 1 MFERDSRLEPSKKLQVAKELGLQPRQVAIWFQNKRARWK 39 69999*********************************9 PP | |||||||
2 | HD-ZIP_I/II | 93.9 | 1.8e-30 | 1 | 77 | 17 | 93 |
HD-ZIP_I/II 17 sFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +Fe++++Lep++K ++a+eLglqprqva+WFqn+RAR+k+k+l +dy+ L+++y++l+++ + L+ke+++L +l+e C.cajan_10940 1 MFERDSRLEPSKKLQVAKELGLQPRQVAIWFQNKRARWKSKKLQRDYTILRANYNSLASHFDLLNKEHQALLIQLQE 77 6999*******************************************************************999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 14.252 | 1 | 41 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.5E-11 | 1 | 39 | IPR001356 | Homeobox domain |
SMART | SM00389 | 0.002 | 1 | 45 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.01E-12 | 1 | 53 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.9E-14 | 2 | 47 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.48E-10 | 2 | 42 | No hit | No description |
PRINTS | PR00031 | 2.5E-5 | 12 | 21 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 16 | 39 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.5E-5 | 21 | 37 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.4E-12 | 41 | 81 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MFERDSRLEP SKKLQVAKEL GLQPRQVAIW FQNKRARWKS KKLQRDYTIL RANYNSLASH 60 FDLLNKEHQA LLIQLQELND EIHKSLEHAE SCTTGKKMES ERENGDMMKS EQEVKQSKRS 120 EDNIVGSVNV LSEDDSGIKA EQHFGVEDEP AAVNVVHHAI AAEDWCVFDY DDILGQSTSS 180 DYQWWDFYS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 35 | 43 | ARWKSKKLQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_10940 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 5e-50 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020213459.1 | 1e-140 | homeobox-leucine zipper protein ATHB-12 | ||||
TrEMBL | A0A151TY30 | 1e-138 | A0A151TY30_CAJCA; Homeobox-leucine zipper protein ATHB-12 | ||||
STRING | XP_007147343.1 | 2e-75 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5635 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61890.1 | 3e-40 | homeobox 12 |