PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_10906
Common NameKK1_011226
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 576aa    MW: 64006.4 Da    PI: 6.7544
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_10906genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.2e-13405451455
                    HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                    +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ L  A+ YI++Lq
  C.cajan_10906 405 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAIAYINELQ 451
                    799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-5335217IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.57E-18400464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.301401450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-14404455No hitNo description
Gene3DG3DSA:4.10.280.103.7E-18405464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-11405451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-17407456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MVGAVLGGGA LEFLMRNSVW NESVLMAVGS EEGVQNNLSD LVERPNQSNF SWNYAIFWQL  60
SQSKSGDWVL CWGDGCCREP NEEEEVAVRG RGRLVEEEMH QRMRKRVLQK LHTTFGGSDE  120
DNYAVGLDHV TDTEMFFLAS MYFSFPRGHG GPGKCFASGN HLWLKSVSDY CVRSFLAKSA  180
GIQTVVLVPT DLGVVELGSV RILPESFQLL HTVKSLFSTH SSNALMRNSV WNEIVELGSV  240
RILPESFQLL HTVKSLFSTH SSNALFTGLA IGDGKVDAGV PIPKVFREKL AVRKMDDNNR  300
TWGGHPRNGL QAEIFAPRAS TSSVANAVRH DFRLGNTYQP QRQLQMQIDF TGATSRPSSV  360
KPVIGESELS DVEASCKEEQ PILADERKPR KRGRKPANGR DEPLNHVEAE RQRREKLNQR  420
FYALRSVVPN ISKMDKASLL GDAIAYINEL QAKVRIMEAE RERFGSTSKD ESVLEGNSSL  480
DIQDKEASRV NVQAVRDEVI VKVSCPFDAH PLSKVIQTLN EAQISVVESK LTAANDTIFH  540
TFVIKSQESE QLTKDKLIAV FSPTESNSLQ PLSSVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-29399461264Transcription factor MYC2
5gnj_B3e-29399461264Transcription factor MYC2
5gnj_E3e-29399461264Transcription factor MYC2
5gnj_F3e-29399461264Transcription factor MYC2
5gnj_G3e-29399461264Transcription factor MYC2
5gnj_I3e-29399461264Transcription factor MYC2
5gnj_M3e-29399461264Transcription factor MYC2
5gnj_N3e-29399461264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1386394RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_10906
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020212241.10.0transcription factor bHLH13
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A151TY930.0A0A151TY93_CAJCA; Transcription factor bHLH13
STRINGXP_007147321.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-176bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]