PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_09456
Common NameKK1_009724
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HSF
Protein Properties Length: 231aa    MW: 26740.2 Da    PI: 9.415
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_09456genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.51.2e-34251162102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y ++ed+++++++sw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF +++Fkkg++ell++i
  C.cajan_09456  25 FLMKTYMLVEDPATDDVVSWNREGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSR---------WEFFNDKFKKGERELLHEI 111
                    9****************************************************************999.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    +r+k 
  C.cajan_09456 112 RRRKA 116
                    **985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.6E-5121114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.18E-3221114IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.5E-3622114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.9E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.0E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.0E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.0E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MEGVRNDHDN KGLLECARKC TPPPFLMKTY MLVEDPATDD VVSWNREGTA FVVWQPAEFA  60
RDLLPTLFKH SNFSSFVRQL NTYGFRKVAT SRWEFFNDKF KKGERELLHE IRRRKAWTNK  120
QQPNAPNQDS DEDQRSSSTS SSSGYTTLVD ENKRLKKENG VLSSELTSMK RKCKELLDLV  180
AKYSSHAKEK EEDERPKLFG VRLDVQGGRE MKRNRTEMSE SASIMLSQSC K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-202311418120Heat shock factor protein 1
5d5u_B2e-202311427129Heat shock factor protein 1
5d5v_B2e-202311427129Heat shock factor protein 1
5d5v_D2e-202311427129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_09456
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0987911e-168BT098791.1 Soybean clone JCVI-FLGm-16B16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020213314.11e-172heat stress transcription factor B-3
SwissprotO222306e-70HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A151TU311e-172A0A151TU31_CAJCA; Heat stress transcription factor B-3
STRINGGLYMA19G31940.21e-145(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.11e-67heat shock transcription factor B3