PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_08657 | ||||||||
Common Name | KK1_008910 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB | ||||||||
Protein Properties | Length: 316aa MW: 36411.6 Da PI: 5.6665 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.6 | 2.6e-17 | 20 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ eEd+ll+++++ +G g+W++ a + g++R++k+c++rw++yl C.cajan_08657 20 RGPWSVEEDDLLINYIANHGEGRWNLLAIYSGLRRSGKSCRLRWLNYL 67 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.1 | 6.1e-16 | 73 | 116 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ +++ ++G++ W++Ia+ ++ gRt++++k++w++ C.cajan_08657 73 RGNLTKEEQLLIFELHSKWGNR-WSKIAQQLP-GRTDNEIKNYWRT 116 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.586 | 15 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.03E-29 | 18 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.2E-15 | 19 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-16 | 20 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-22 | 21 | 74 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.36E-11 | 22 | 67 | No hit | No description |
PROSITE profile | PS51294 | 25.305 | 68 | 122 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-14 | 72 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 73 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 75 | 120 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.37E-11 | 77 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MSTSPKSIIY SCEDDNELRR GPWSVEEDDL LINYIANHGE GRWNLLAIYS GLRRSGKSCR 60 LRWLNYLKPD VKRGNLTKEE QLLIFELHSK WGNRWSKIAQ QLPGRTDNEI KNYWRTRIQK 120 QSRYMKFDTD RTEFVEFVKG LKMTRYLHKA QESSSSAMSI QDQAIPLPFE GGCHYSSFEI 180 GTTPTTQITC QGTCVNEGGP NCLYSDSEHN NGSSISSSES VNILNMDQPL EYTTSQFQAL 240 DSSDFGIFSH DGYCINNNNE YGMDAFDLTT TTTMVAEDLK LPMIDCRISQ TSWPNKEFAR 300 SAWSMDELWH FRNTQR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-26 | 17 | 121 | 1 | 104 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_08657 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235696 | 1e-76 | AC235696.2 Glycine max clone GM_WBb0070F18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020211525.2 | 0.0 | transcription factor MYB62 | ||||
TrEMBL | A0A151TRN9 | 0.0 | A0A151TRN9_CAJCA; Myb-related protein 305 family | ||||
STRING | GLYMA09G31570.1 | 1e-157 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1639 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 6e-66 | myb domain protein 62 |