PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_08209
Common NameKK1_008455
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HD-ZIP
Protein Properties Length: 286aa    MW: 31450 Da    PI: 8.1532
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_08209genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.4e-20126180256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    rk+ ++tkeq  +Lee F+++++++ ++++ LA+kl+L+ rqV vWFqNrRa+ k
  C.cajan_08209 126 RKKLRLTKEQAMVLEETFKEHNTLNPKRKQALAEKLNLKPRQVEVWFQNRRARTK 180
                    678899***********************************************98 PP
2HD-ZIP_I/II122.91.6e-39126215191
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                    +kk+rl+keq+ +LEe+F+e+++L+p+rK++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr +++l+een+r++ke +eLr +l
  C.cajan_08209 126 RKKLRLTKEQAMVLEETFKEHNTLNPKRKQALAEKLNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRYCENLTEENRRMHKELQELR-AL 215
                    69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.5E-21194IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.606.0E-20107180IPR009057Homeodomain-like
SuperFamilySSF466891.03E-19109183IPR009057Homeodomain-like
PROSITE profilePS5007117.637122182IPR001356Homeobox domain
SMARTSM003898.0E-17124186IPR001356Homeobox domain
PfamPF000462.7E-17126180IPR001356Homeobox domain
CDDcd000862.12E-16126183No hitNo description
PROSITE patternPS000270157180IPR017970Homeobox, conserved site
SMARTSM003402.1E-24182225IPR003106Leucine zipper, homeobox-associated
PfamPF021831.1E-8182216IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MGEKDDGLGL SLGLSLGVNQ QPPPFNHMHK PQQLLPINHN NISFGDLFHL PDRSSDVARG  60
IDVNSAAECD EDNGVSSPNS AVSSVSGGKR GEREDDNAAG VGGERTSCSR GSDDDEGGGS  120
GGDGGRKKLR LTKEQAMVLE ETFKEHNTLN PKRKQALAEK LNLKPRQVEV WFQNRRARTK  180
LKQTEVDCEY LKRYCENLTE ENRRMHKELQ ELRALKLSPQ MYMHMNPPTT LTMCPSCERA  240
HSSASSSSPA TGHSATAPNN RKLFGANIRR TAPVSTWPFE GSVSRP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174182RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_08209
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358924e-82AC235892.2 Glycine max clone GM_WBc0089E01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020213592.10.0homeobox-leucine zipper protein HAT3
SwissprotP466021e-86HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A151TQL80.0A0A151TQL8_CAJCA; Homeobox-leucine zipper protein HAT3
STRINGGLYMA18G48880.11e-142(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.18e-66homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]