PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_08122 | ||||||||
Common Name | KK1_008366 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | B3 | ||||||||
Protein Properties | Length: 260aa MW: 30446.2 Da PI: 9.5204 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62 | 9.9e-20 | 149 | 243 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ff ++++++ ++ l +p++f+++ ++++ ++l +++g+sW vk++ +++sg+++l++ Wk+Fv++ngLk+g ++vF+ +++ + +++v + C.cajan_08122 149 FFIREMHPSYINNYFLAMPRNFITAEELEEYD--SIILWNSEGKSWHVKFSLNRSSGQIFLKGRWKNFVEDNGLKVGNVCVFEQMQKLGISFRVFI 242 556667788888888********999988666..5************************************************6665444455555 PP E CS B3 97 f 97 f C.cajan_08122 243 F 243 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.616 | 1 | 90 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0051 | 6 | 90 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.39E-15 | 7 | 90 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.1E-7 | 11 | 86 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.75E-8 | 11 | 88 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 4.5E-13 | 11 | 90 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.1E-22 | 142 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.42E-23 | 144 | 246 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.86E-17 | 148 | 244 | No hit | No description |
PROSITE profile | PS50863 | 15.058 | 149 | 246 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-17 | 149 | 244 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.2E-11 | 150 | 246 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MSYTMLTKSL WQRIPRNFVN KCWEGISNPI LLLLPNGAKW EINWKTLDAD VWLVDNWKKF 60 VLFYSLDQNH LLVFRYVGMS RFQVVILNQS GLEIGYPLME ETLHGRKRIM DADSRCLKSK 120 AIQREKLLEK SESSVALRSA MAFHSENPFF IREMHPSYIN NYFLAMPRNF ITAEELEEYD 180 SIILWNSEGK SWHVKFSLNR SSGQIFLKGR WKNFVEDNGL KVGNVCVFEQ MQKLGISFRV 240 FIFRNPEESN PGPSMLSGKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_08122 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020211029.2 | 1e-152 | B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A151TQ63 | 0.0 | A0A151TQ63_CAJCA; B3 domain-containing protein REM9 | ||||
STRING | GLYMA20G24211.1 | 1e-95 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14649 | 5 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 2e-16 | B3 family protein |