PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_08105
Common NameKK1_008349
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C2H2
Protein Properties Length: 516aa    MW: 55734.6 Da    PI: 9.6191
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_08105genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-057193123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   + C+ C+k F r  nL+ H r H
  C.cajan_08105 71 FICEVCNKGFQREQNLQLHRRGH 93
                   89*******************88 PP
2zf-C2H212.10.00061147169123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC +C+k +  +s+ k H +t+
  C.cajan_08105 147 WKCDKCSKKYAVQSDWKAHSKTC 169
                    58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.67E-77093No hitNo description
Gene3DG3DSA:3.30.160.605.6E-67093IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.997193IPR007087Zinc finger, C2H2
SMARTSM003550.00527193IPR015880Zinc finger, C2H2-like
PfamPF121712.5E-57193IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM00355130112142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.6E-5135168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.67E-7142167No hitNo description
SMARTSM00355150147167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0090502Biological ProcessRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0003676Molecular Functionnucleic acid binding
GO:0004526Molecular Functionribonuclease P activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MAASSSSASL FGFREEDQNQ MKQQHSLTPP SSTPPAAPPP QKKKRNQPGT PYPDAEVIAL  60
SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLK QKTTKEPKRK VYLCPEPTCV  120
HHDPSRALGD LTGIKKHYSR KHGEKKWKCD KCSKKYAVQS DWKAHSKTCG TREYRCDCGT  180
LFSRRDSFIT HRAFCDALAQ ESARQPPNLG GGIGNHLFGT TNMALNLSQQ PFFMSEPNQN  240
YHPEQQGLVP NKPFQQGLMQ LSDHISNNHH NSMTSSPFNL PFLTNNTTNT IPEHFNSANG  300
GGNNNNEGTN FFTTSSVPSL FSNSNTNNSG NAIAHMSATA LLQKAAQMGA TSSNSTASLL  360
KSFGSASSSS GSKSEHRPLV AAANYGGIFG GNVNVNEQSN SNLQDLMNSF AVGGNSSIFE  420
GGSSGGFSVA GFEAYDHGNN KDPKVHAMSS SSIGGSDRLT RDFLGVGQIV RSMSGNGGVP  480
QREHGFNLSS LEAERNNNNN TAPSGQSFGG GGGNFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35143204364Zinc finger protein JACKDAW
5b3h_F2e-35143204364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_08105
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020212189.10.0protein indeterminate-domain 5, chloroplastic isoform X1
SwissprotQ9ZUL31e-136IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A151TQ060.0A0A151TQ06_CAJCA; Zinc finger protein MAGPIE
STRINGGLYMA20G24366.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-104indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]