PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_07385 | ||||||||
Common Name | KK1_007588 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | HSF | ||||||||
Protein Properties | Length: 251aa MW: 28297.1 Da PI: 9.593 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111.7 | 5.3e-35 | 22 | 112 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 Fl k+y++++d++++++isw+++g+sf+v+++ fa++ LpkyFkh+nf+SFvRQLn+YgF+kv ++ weF+++sF++g+k+ll++i C.cajan_07385 22 FLAKTYHLVDDHTTDHVISWNHTGSSFIVWNTAVFATDFLPKYFKHNNFSSFVRQLNTYGFRKVVPHR---------WEFSNDSFRRGHKRLLCEI 108 9****************************************************************999.........******************* PP XXXX CS HSF_DNA-bind 98 krkk 101 +r+k C.cajan_07385 109 QRRK 112 **97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.4E-36 | 15 | 106 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.1E-53 | 18 | 111 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 9.66E-33 | 19 | 111 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.0E-31 | 22 | 111 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.4E-20 | 22 | 45 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.4E-20 | 60 | 72 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 61 | 85 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.4E-20 | 73 | 85 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MPPPLQRNNA HSTTLRSLPT PFLAKTYHLV DDHTTDHVIS WNHTGSSFIV WNTAVFATDF 60 LPKYFKHNNF SSFVRQLNTY GFRKVVPHRW EFSNDSFRRG HKRLLCEIQR RKILSPSPPL 120 PAIPIVSPSN SSPAALLDEN ERLRKENVLL TKELEEMKSL CNNIFNLMSN YANGQADGGA 180 AAAKTLGLMP AKRCSGEEEM NPKLFGVAIG TKRGREEYDR VLSVDDGSFY VEVKSEPLDL 240 ARHGENRKSG G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 9e-23 | 22 | 111 | 29 | 129 | Heat shock factor protein 1 |
5d5v_B | 9e-23 | 22 | 111 | 29 | 129 | Heat shock factor protein 1 |
5d5v_D | 9e-23 | 22 | 111 | 29 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_07385 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235230 | 2e-56 | AC235230.1 Glycine max strain Williams 82 clone GM_WBb0026I18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020209636.1 | 0.0 | heat stress transcription factor B-2a | ||||
Swissprot | Q9SCW4 | 3e-73 | HFB2A_ARATH; Heat stress transcription factor B-2a | ||||
TrEMBL | A0A151U6F5 | 0.0 | A0A151U6F5_CAJCA; Heat stress transcription factor B-2a | ||||
STRING | XP_007143381.1 | 1e-124 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2037 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 7e-68 | heat shock transcription factor B2A |
Publications ? help Back to Top | |||
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