PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_06276
Common NameKK1_006453
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HSF
Protein Properties Length: 410aa    MW: 46558.4 Da    PI: 5.5023
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_06276genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.72.2e-34201122103
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k++++++d++l+ +isw + g +fvv+d+ efa+ vLp++Fkh+nf+SFvRQLn+YgF+k++ ++         weF ++ F++g+k+ll++i
  C.cajan_06276  20 FLSKTFDLVDDPTLDPIISWGSAGFTFVVWDPLEFARIVLPRHFKHNNFSSFVRQLNTYGFRKIDADK---------WEFFNEAFQRGNKHLLKNI 106
                    9****************************************************************999.........******************* PP

                    XXXXXX CS
   HSF_DNA-bind  98 krkkse 103
                    +r++s+
  C.cajan_06276 107 QRRRSS 112
                    ***987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.6E-5316109IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.26E-3416109IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.2E-3617109IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.3E-182043IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.6E-3020109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-185870IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405983IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-187183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MNPSRDHSPK PLELNPVPPF LSKTFDLVDD PTLDPIISWG SAGFTFVVWD PLEFARIVLP  60
RHFKHNNFSS FVRQLNTYGF RKIDADKWEF FNEAFQRGNK HLLKNIQRRR SSQSQQVGNY  120
IGIGSSTDAG KSGVEVEIER LRKERSMLMD ELVDLQQEQR RTAHHALEVN QRLQTAEQRQ  180
KQMLSFLAKL FQNPAFLARL RHKKELKEID SPRMVRKFVK QHQHETGTAE TLKEGQIVRY  240
QPDWRIIGMS SETPELSPVS IEQSPHYLSQ GSSSFGPEYP LFKGKSVMNP NLEVPPDFAS  300
LPEVLTKEKG FLDFSALGIE GIVKLEDIWD CDLNVSGAAS SCGNELWDNP INYEVLPEFG  360
VTSGMSESDI WDIGSGSMGI DKWPADEPSL GEKYGQAGEP NEDRPKNNDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-241711417125Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_06276
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-163AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020239991.10.0heat stress transcription factor A-3
TrEMBLA0A151U3C30.0A0A151U3C3_CAJCA; Heat stress transcription factor A-3
STRINGXP_007145255.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87823038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-92heat shock transcription factor A3