PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_06129 | ||||||||
Common Name | KK1_006298 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 255aa MW: 29694.8 Da PI: 10.4969 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.3 | 1.1e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien rqvtfskRrng+lKKA+ELSvLCdaevaviifsstgklye+s+ C.cajan_06129 9 KKIENLNSRQVTFSKRRNGLLKKAKELSVLCDAEVAVIIFSSTGKLYEFSN 59 68***********************************************95 PP | |||||||
2 | K-box | 61.2 | 4.1e-21 | 90 | 174 | 14 | 98 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ ++ + + Lk+ei +L++ +++G++L+ LslkeLq+Le+qL ++++ +++kK+++l+eq+++++ +e+++ en+ Lrk++ C.cajan_06129 90 NQDMEGDTNLLKDEITKLRSAYIRMMGKELDGLSLKELQHLENQLSEGIQAVKNKKEQVLVEQLRRSRIQEQKAMLENEVLRKQV 174 578899999**************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.7E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.983 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.06E-33 | 2 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.54E-42 | 2 | 76 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.678 | 90 | 180 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 6.9E-15 | 91 | 174 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0048577 | Biological Process | negative regulation of short-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MGRGKIEIKK IENLNSRQVT FSKRRNGLLK KAKELSVLCD AEVAVIIFSS TGKLYEFSNT 60 SMEHILSRYS KGVESDCAEQ PLVLLLRTFN QDMEGDTNLL KDEITKLRSA YIRMMGKELD 120 GLSLKELQHL ENQLSEGIQA VKNKKEQVLV EQLRRSRIQE QKAMLENEVL RKQVRIKPDS 180 KVNYNYVKLT FHHKQSIFLF IFNLLIVNSL RRCKIKQRHS SLNSVLWIGH FPRMVQNPFS 240 IVLQRKMTFQ ILPCS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 9e-21 | 1 | 71 | 1 | 71 | MEF2C |
5f28_B | 9e-21 | 1 | 71 | 1 | 71 | MEF2C |
5f28_C | 9e-21 | 1 | 71 | 1 | 71 | MEF2C |
5f28_D | 9e-21 | 1 | 71 | 1 | 71 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_06129 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235415 | 1e-102 | AC235415.1 Glycine max strain Williams 82 clone GM_WBb0132C18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020207051.1 | 1e-109 | agamous-like MADS-box protein AGL18 | ||||
Swissprot | Q9M2K8 | 4e-59 | AGL18_ARATH; Agamous-like MADS-box protein AGL18 | ||||
TrEMBL | A0A151U301 | 0.0 | A0A151U301_CAJCA; Agamous-like MADS-box protein AGL15 | ||||
STRING | GLYMA02G33040.1 | 3e-97 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3582 | 32 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57390.1 | 1e-61 | AGAMOUS-like 18 |