PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_05883
Common NameKK1_006032
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C2H2
Protein Properties Length: 349aa    MW: 40451.1 Da    PI: 8.4982
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_05883genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89.4e-066485223
                   EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                   +C+ Cg +F+ + +L +H+++H
  C.cajan_05883 64 TCEECGATFKKHAYLLQHMQSH 85
                   6*******************99 PP
2zf-C2H215.26.2e-0591115123
                    EEET..TTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                    + C+  dC   ++rk++L+rH+  H
  C.cajan_05883  91 FACTvdDCQANYRRKDHLTRHLLQH 115
                    789999***************9887 PP
3zf-C2H212.20.00056120145123
                    EEET..TTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                    +kCp  +C+  Fs + n+krH    H
  C.cajan_05883 120 FKCPveNCNIEFSLHGNMKRHVEEiH 145
                    89*******************98777 PP
4zf-C2H216.52.4e-05160184123
                    EEET..TTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                    ++C+   Cgk+F+  s L++H  +H
  C.cajan_05883 160 FVCSeiGCGKVFRYASRLQKHEGSH 184
                    89*******************8666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.7041946IPR007087Zinc finger, C2H2
SMARTSM00355171941IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.5E-1062115No hitNo description
PROSITE profilePS5015713.3396390IPR007087Zinc finger, C2H2
SMARTSM003550.016385IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.5E-86490IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
PROSITE profilePS501579.76491120IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.0E-1091117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.04591115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028093115IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-5118146IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.39E-6118146No hitNo description
SMARTSM003550.0068120145IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.265120150IPR007087Zinc finger, C2H2
PROSITE patternPS000280122145IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.9E-7157184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.053160189IPR007087Zinc finger, C2H2
SMARTSM003550.003160184IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280162184IPR007087Zinc finger, C2H2
SMARTSM003550.64192217IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280194217IPR007087Zinc finger, C2H2
SMARTSM0035527220241IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-5231272IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.31E-8232289No hitNo description
PROSITE profilePS5015712.861250280IPR007087Zinc finger, C2H2
SMARTSM003550.057250275IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280252275IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.1E-6274304IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003556.5281307IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280283307IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MVEAMEREET PKFRDIRRYI CEFCGICRSK KALITSHINS HHKEEAEKAE AEKDPQSDPV  60
KSNTCEECGA TFKKHAYLLQ HMQSHSLERP FACTVDDCQA NYRRKDHLTR HLLQHQGKTF  120
KCPVENCNIE FSLHGNMKRH VEEIHDDSST SIWDKSPKQF VCSEIGCGKV FRYASRLQKH  180
EGSHVKLESV DVMCLEPGCM KHFTNVQCLQ AHVKSSHQYK TCDICGTKQL KKNIKRHLRS  240
HEASSSSETF QCEFKGCCCT FSTKSNLDKH KKVVHFKEKP FVCGFPDCGM RFAYKHVRDN  300
HEKTAKHVFT LGDFEEGDEE FRSRPRGGRK RECPTVEMLI RKRVTPPSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A5e-166721919162PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D5e-166721919162PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_05883
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020229743.10.0transcription factor IIIA
SwissprotQ84MZ41e-136TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A151U2750.0A0A151U275_CAJCA; Transcription factor IIIA
STRINGXP_007142319.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-136transcription factor IIIA